Motivated by inferring cellular signaling networks using noisy flow cytometry data, we develop procedures to draw inference for Bayesian networks based on error-prone data. Two methods for inferring causal relationships between nodes in a network are proposed based on penalized estimation methods that account for measurement error and encourage sparsity. We discuss consistency of the proposed network estimators and develop an approach for selecting the tuning parameter in the penalized estimation methods. Empirical studies are carried out to compare the proposed methods with a naive method that ignores measurement error. Finally, we apply these methods to infer signaling networks using single cell flow cytometry data
The vast majority of network data sets contain errors and omissions, although this fact is rarely in...
Abstract Background The advent of RNA interference techniques enables the selective silencing of bio...
Recent years have seen much interest in the study of systems characterized by multiple interacting c...
Paper on arXiv (arXiv:1310.8341), currently in review with Scientific Reports (as of 29 May 2015).Ge...
Abstract—We apply a search-based technique for learn-ing high-quality Bayesian networks from proteom...
Motivation: Network inference algorithms are powerful computational tools for identifying putative c...
MOTIVATION: Network inference algorithms are powerful computational tools for identifying putative c...
To understand how the components of a complex system like the biological cell interact and regulate ...
We recently developed an approach for testing the accuracy of network inference algorithms by applyi...
Inferring cell signaling networks from high-throughput data is a challenging problem in systems biol...
Causal Bayesian networks are graphically represented by directed acyclic graphs (DAGs). Learning cau...
Network inference has been attracting increasing attention in several fields, notably systems biolog...
Background: Inference of biological networks has become an important tool in Systems Biology. Nowada...
Background: There are several studies in the literature depicting measurement error in gene expressi...
Structure learning algorithms that learn the graph of a Bayesian network from observational data oft...
The vast majority of network data sets contain errors and omissions, although this fact is rarely in...
Abstract Background The advent of RNA interference techniques enables the selective silencing of bio...
Recent years have seen much interest in the study of systems characterized by multiple interacting c...
Paper on arXiv (arXiv:1310.8341), currently in review with Scientific Reports (as of 29 May 2015).Ge...
Abstract—We apply a search-based technique for learn-ing high-quality Bayesian networks from proteom...
Motivation: Network inference algorithms are powerful computational tools for identifying putative c...
MOTIVATION: Network inference algorithms are powerful computational tools for identifying putative c...
To understand how the components of a complex system like the biological cell interact and regulate ...
We recently developed an approach for testing the accuracy of network inference algorithms by applyi...
Inferring cell signaling networks from high-throughput data is a challenging problem in systems biol...
Causal Bayesian networks are graphically represented by directed acyclic graphs (DAGs). Learning cau...
Network inference has been attracting increasing attention in several fields, notably systems biolog...
Background: Inference of biological networks has become an important tool in Systems Biology. Nowada...
Background: There are several studies in the literature depicting measurement error in gene expressi...
Structure learning algorithms that learn the graph of a Bayesian network from observational data oft...
The vast majority of network data sets contain errors and omissions, although this fact is rarely in...
Abstract Background The advent of RNA interference techniques enables the selective silencing of bio...
Recent years have seen much interest in the study of systems characterized by multiple interacting c...