International audienceThe organisation of genetic variability is of primary importance in designing conservation strategies. In this context, the conservation units are often defined using the concept of Evolutionary Significant Units (ESUs) what could appear as a useful guide but are very rarely used. Another difficulty arises when species hybridise as it is the case in cyprinid fishes for which the debate joins discussions on the species definitions. For example, the vairone, Leuciscus souffia (Teleostei: Cyprinidae) is a protected species (IUCN, Bern convention, Habitat directive) but current legislation does not take into account its ambiguous taxonomic status, neither its genetic variability nor its ecological preferences. In this pape...