Motivated by recent experiments on an antibiotic resistance gene, we investigate genetic interactions between synonymous mutations in the framework of exclusion models of translation. We show that the range of possible interactions is markedly different depending on whether translation efficiency is assumed to be proportional to ribosome current or ribosome speed. In the first case every mutational effect has a definite sign that is independent of genetic background, whereas in the second case the effect-sign can vary depending on the presence of other mutations. The latter result is demonstrated using configurations of multiple translational bottlenecks induced by slow codons. (C) 2021 Elsevier B.V. All rights reserved
Previous studies have shown that translation elongation is regulated by multiple factors, but the ob...
AbstractTranslation is a central cellular process and the complexity of its mechanism necessitates m...
Motivation: During translation, ribosomes move linearly along mRNA. In this process, a simultaneous ...
Motivated by recent experiments on an antibiotic resistance gene, we investigate genetic interaction...
Antibiotics that interfere with translation, when combined, interact in diverse and difficult-to-pre...
SummaryThe genetic code is degenerate. Each amino acid is encoded by up to six synonymous codons; th...
Frequencies of synonymous codons are typically non-uniform, despite the fact that such codons corres...
AbstractGenetic code redundancy allows most amino acids to be encoded by multiple codons that are no...
Random mutations in genes from disparate protein classes may have different distributions of fitness...
Experimental evidence shows that synonymous mutations can have important consequences on genetic fit...
Experimental evidence shows that synonymous mutations can have important consequences on genetic fit...
Natural selection favors certain synonymous codons which aid translation in Escherichia coli, yet co...
Though synonymous variation observed in protein-coding genes is thought to be functionally equivalen...
Improved computational modeling of protein translation rates, including better prediction of where t...
The study of bacterial evolution is fundamental for addressing current problems of antibiotic resist...
Previous studies have shown that translation elongation is regulated by multiple factors, but the ob...
AbstractTranslation is a central cellular process and the complexity of its mechanism necessitates m...
Motivation: During translation, ribosomes move linearly along mRNA. In this process, a simultaneous ...
Motivated by recent experiments on an antibiotic resistance gene, we investigate genetic interaction...
Antibiotics that interfere with translation, when combined, interact in diverse and difficult-to-pre...
SummaryThe genetic code is degenerate. Each amino acid is encoded by up to six synonymous codons; th...
Frequencies of synonymous codons are typically non-uniform, despite the fact that such codons corres...
AbstractGenetic code redundancy allows most amino acids to be encoded by multiple codons that are no...
Random mutations in genes from disparate protein classes may have different distributions of fitness...
Experimental evidence shows that synonymous mutations can have important consequences on genetic fit...
Experimental evidence shows that synonymous mutations can have important consequences on genetic fit...
Natural selection favors certain synonymous codons which aid translation in Escherichia coli, yet co...
Though synonymous variation observed in protein-coding genes is thought to be functionally equivalen...
Improved computational modeling of protein translation rates, including better prediction of where t...
The study of bacterial evolution is fundamental for addressing current problems of antibiotic resist...
Previous studies have shown that translation elongation is regulated by multiple factors, but the ob...
AbstractTranslation is a central cellular process and the complexity of its mechanism necessitates m...
Motivation: During translation, ribosomes move linearly along mRNA. In this process, a simultaneous ...