International audienceIn 2008, Braga et al. proposed an algorithm to perform the enumeration of traces that sort a signed permutation by reversals. This algorithm has exponential complexity in both time and space. The original implementation uses a special structure, to handle the information during the process. However, even with this structure, memory consumption is still a problem. In this work, we propose a stack structure to represent the set of traces that is being enumerated by the algorithm. This new structure consumes less memory and can be kept in the main memory, improving the space and time performance of the algorithm
International audienceIn comparative genomics, algorithms that sort permutations by reversals are of...
AbstractA cut-and-paste operation can be a reversal, a transposition, or a transreversal on circular...
Abstract. Genome rearrangement algorithms are powerful tools to analyze gene orders in molecular evo...
International audienceTraditional algorithms to solve the problem of sorting by signed reversals out...
International audienceBackgroundTraditional algorithms to solve the problem of sorting by signed rev...
We give a quadratic algorithm for finding the minimum number of reversals needed to sort a signed pe...
Sorting signed permutations by reversals is a fundamental problem in computationial molecular biolog...
AbstractThe problem of sorting signed permutations by reversals (SBR) is a fundamental problem in co...
The rearrangement distance between single-chromosome genomes can be estimated as the minimum number ...
Abstract We describe an average-case O(n2) algorithm to list all reversals on a signed permutation π...
International audienceThis paper proposes new algorithms for computing pairwise rearrangement scenar...
This paper discusses a bit-vector implementation of an algorithm that computes an optimal sequence ...
The problem of estimating evolutionary distance from differences in gene order has been distilled to...
AbstractIn 1995, Hannenhalli and Pevzner gave a first polynomial solution to the problem of finding ...
this paper, we study the problem of sorting permutations and circular permutations using as few fixe...
International audienceIn comparative genomics, algorithms that sort permutations by reversals are of...
AbstractA cut-and-paste operation can be a reversal, a transposition, or a transreversal on circular...
Abstract. Genome rearrangement algorithms are powerful tools to analyze gene orders in molecular evo...
International audienceTraditional algorithms to solve the problem of sorting by signed reversals out...
International audienceBackgroundTraditional algorithms to solve the problem of sorting by signed rev...
We give a quadratic algorithm for finding the minimum number of reversals needed to sort a signed pe...
Sorting signed permutations by reversals is a fundamental problem in computationial molecular biolog...
AbstractThe problem of sorting signed permutations by reversals (SBR) is a fundamental problem in co...
The rearrangement distance between single-chromosome genomes can be estimated as the minimum number ...
Abstract We describe an average-case O(n2) algorithm to list all reversals on a signed permutation π...
International audienceThis paper proposes new algorithms for computing pairwise rearrangement scenar...
This paper discusses a bit-vector implementation of an algorithm that computes an optimal sequence ...
The problem of estimating evolutionary distance from differences in gene order has been distilled to...
AbstractIn 1995, Hannenhalli and Pevzner gave a first polynomial solution to the problem of finding ...
this paper, we study the problem of sorting permutations and circular permutations using as few fixe...
International audienceIn comparative genomics, algorithms that sort permutations by reversals are of...
AbstractA cut-and-paste operation can be a reversal, a transposition, or a transreversal on circular...
Abstract. Genome rearrangement algorithms are powerful tools to analyze gene orders in molecular evo...