We explored the electrochemistry of a perfluoroalkyl viologen, N,N′-di-(1H,1H,2H,2H-perfluorobutyl)-4,4′-bipyridinium dichloride (FC4VFC4) in a Nafion film on an Au electrode. The capability of FC4VFC4 as a redox-active probe for micro-environments of the ionic channels in the Nafion film was highlighted by clarifying the difference of its electrochemical behavior from that of its alkyl analog, dibutyl viologen (C4VC4). The time course of cyclic voltammograms (CVs) was tracked after immersion of a Nafion film-coated Au electrode in viologen solutions of various concentrations, Cs. The strongly Cs-dependent time change revealed the formation of an aggregate of FC4VFC4 in the ionic channels in the Nafion film. The aggregate blocks its own red...