This work provides a curated database of experimental and calculated hydration free energies for small molecules in water, along with experimental values and input files. Experimental values are taken from prior literature and will continue to be curated, with updated experimental references and data added as it becomes available. Calculated values are based on the GAFF small molecule force field in TIP3P water with AM1-BCC charges, as in the provided parameter files. Values were calculated using the GROMACS simulation package, with full details given in references cited within the database itself. This database builds on previous work from the Mobley lab and others, and extends the prior database. With deposition in eScholarship, the datab...
This dataset includes underlying data for the publication "Evaluating parameterization protoco...
Motivation: The molecular dynamics simulation package GROMACS (Hess et al., 2008) is a widely used t...
<div>Computer simulations of bio-molecular systems often use force fields, which are combinations of...
This work provides a curated database of experimental and calculated hydration free energies for sma...
This work provides a curated database of experimental and calculated hydration free energies for sma...
This provides access to the late J. Peter Guthrie's small molecule hydration free energy database, w...
Alchemical free energy calculations are an increasingly important modern simulation technique to cal...
This dataset provides the parameters and results generated for the study "Evaluation of solvati...
International audienceWe assess the performance of molecular density functional theory (MDFT) to pre...
Solvation free energies can now be calculated precisely from molecular simulations, providing a valu...
International audienceWe assess the performance of molecular density functional theory (MDFT) to pre...
Here, we give an overview of the small molecule hydration portion of the SAMPL4 challenge, which foc...
We report on the results of testing the reference interaction site model (RISM) for the estimation o...
Hydration free energies of small molecules are commonly used as benchmarks for solvation models. How...
This dataset provides the parameters and results generated for the study "Evaluation of solvation fr...
This dataset includes underlying data for the publication "Evaluating parameterization protoco...
Motivation: The molecular dynamics simulation package GROMACS (Hess et al., 2008) is a widely used t...
<div>Computer simulations of bio-molecular systems often use force fields, which are combinations of...
This work provides a curated database of experimental and calculated hydration free energies for sma...
This work provides a curated database of experimental and calculated hydration free energies for sma...
This provides access to the late J. Peter Guthrie's small molecule hydration free energy database, w...
Alchemical free energy calculations are an increasingly important modern simulation technique to cal...
This dataset provides the parameters and results generated for the study "Evaluation of solvati...
International audienceWe assess the performance of molecular density functional theory (MDFT) to pre...
Solvation free energies can now be calculated precisely from molecular simulations, providing a valu...
International audienceWe assess the performance of molecular density functional theory (MDFT) to pre...
Here, we give an overview of the small molecule hydration portion of the SAMPL4 challenge, which foc...
We report on the results of testing the reference interaction site model (RISM) for the estimation o...
Hydration free energies of small molecules are commonly used as benchmarks for solvation models. How...
This dataset provides the parameters and results generated for the study "Evaluation of solvation fr...
This dataset includes underlying data for the publication "Evaluating parameterization protoco...
Motivation: The molecular dynamics simulation package GROMACS (Hess et al., 2008) is a widely used t...
<div>Computer simulations of bio-molecular systems often use force fields, which are combinations of...