Add to ORKGSummaryWe present bammds, a practical tool that allows visualization of samples sequenced by second-generation sequencing when compared with a reference panel of individuals (usually genotypes) using a multidimensional scaling algorithm. Our tool is aimed at determining the ancestry of unknown samples-typical of ancient DNA data-particularly when only low amounts of data are available for those samples.Availability and implementationThe software package is available under GNU General Public License v3 and is freely available together with test datasets https://savannah.nongnu.org/projects/bammds/. It is using R (http://www.r-project.org/), parallel (http://www.gnu.org/software/parallel/), samtools (https://github.com/samtools/samtools).Cont...
Data visualization methods are necessary during the exploration and analysis activities of an increa...
Currently, Forensic DNA research is conducted almost exclusively using capillary electrophoresis to...
Mitochondrial diseases are a heterogeneous group of disorders that can be caused by mutations in the...
SummaryWe present bammds, a practical tool that allows visualization of samples sequenced by second-...
bammds: a tool for assessing the ancestry of low-depth whole-genome data using multidimensional scal...
Summary: Post-mortem damage (PMD) obstructs the proper analysis of ancient DNA samples and can curr...
Patterns of DNA sequence polymorphisms can be used to understand the processes of demography and ada...
Over the last few decades, DNA sequencing has developed from costing billions of dollars to get the ...
The human genome is thought to contain about 80,000 genes and presently only 3,000 are known to be i...
Elucidating the content of a DNA sequence is critical to deeper understand and decode the genetic in...
The study of human genetics was greatly facilitated by the sequencing of the first human genome in 2...
Microsatellites are repetitive DNA sequences usually found in non-coding regions of the genome. Thei...
International audienceBACKGROUND: The distance matrix computed from multiple alignments of homologou...
<div><p>Somatic copy number variations (CNVs) play a crucial role in development of many human cance...
Machine learning enables a computer to learn a relationship between two assumingly related types of ...
Data visualization methods are necessary during the exploration and analysis activities of an increa...
Currently, Forensic DNA research is conducted almost exclusively using capillary electrophoresis to...
Mitochondrial diseases are a heterogeneous group of disorders that can be caused by mutations in the...
SummaryWe present bammds, a practical tool that allows visualization of samples sequenced by second-...
bammds: a tool for assessing the ancestry of low-depth whole-genome data using multidimensional scal...
Summary: Post-mortem damage (PMD) obstructs the proper analysis of ancient DNA samples and can curr...
Patterns of DNA sequence polymorphisms can be used to understand the processes of demography and ada...
Over the last few decades, DNA sequencing has developed from costing billions of dollars to get the ...
The human genome is thought to contain about 80,000 genes and presently only 3,000 are known to be i...
Elucidating the content of a DNA sequence is critical to deeper understand and decode the genetic in...
The study of human genetics was greatly facilitated by the sequencing of the first human genome in 2...
Microsatellites are repetitive DNA sequences usually found in non-coding regions of the genome. Thei...
International audienceBACKGROUND: The distance matrix computed from multiple alignments of homologou...
<div><p>Somatic copy number variations (CNVs) play a crucial role in development of many human cance...
Machine learning enables a computer to learn a relationship between two assumingly related types of ...
Data visualization methods are necessary during the exploration and analysis activities of an increa...
Currently, Forensic DNA research is conducted almost exclusively using capillary electrophoresis to...
Mitochondrial diseases are a heterogeneous group of disorders that can be caused by mutations in the...