Physics-based free energy simulations enable the rigorous calculation of properties, such as conformational equilibria, solvation or binding free energies. While historically most applications have occurred at the atomistic level of resolution, a range of advances in the past years make it possible now to reliably cross the temporal, spatial and theory scales for the modeling of complex systems or the efficient prediction of results at the accuracy level of expensive quantum-mechanical calculations. In this mini-review, we discuss recent methodological advances as well as opportunities opened up by the introduction of machine learning approaches, which tackle the diverse challenges across the different scales, improve the accuracy and feasi...
Molecular dynamics (MD) simulations constitute the cornerstone of contemporary atomistic modeling in...
Accurate modelling of chemical and physical interactions is crucial for obtaining thermodynamic and ...
Abstract: Recently, the combination of state-of-the-art molecular mechanical force fields with conti...
For exploration of chemical and biological systems, the combined quantum mechanics and molecular mec...
Free-energy-based simulations are increasingly providing the narratives about the structures, dynami...
The past few years have witnessed significant advances in developing machine learning methods for mo...
This thesis describes advances in methods to measure free energy changes in simulations of molecular...
Electronic structure calculations, such as those employing Kohn–Sham density functional theory or ab...
Computer simulations play an important role in the study of transformation processes of condensed ma...
International audienceComputer simulations play an important role in the study of transformation pro...
Machine learning encompasses tools and algorithms that are now becoming popular in almost all scient...
Designing molecules and materials with desired properties is an important prerequisite for advancing...
Machine learning techniques are being increasingly used as flexible non-linear fitting and predictio...
Computational capabilities are rapidly increasing, primarily because of the availability of GPU-base...
International audienceThe past decades have witnessed significant progress in the field of molecular...
Molecular dynamics (MD) simulations constitute the cornerstone of contemporary atomistic modeling in...
Accurate modelling of chemical and physical interactions is crucial for obtaining thermodynamic and ...
Abstract: Recently, the combination of state-of-the-art molecular mechanical force fields with conti...
For exploration of chemical and biological systems, the combined quantum mechanics and molecular mec...
Free-energy-based simulations are increasingly providing the narratives about the structures, dynami...
The past few years have witnessed significant advances in developing machine learning methods for mo...
This thesis describes advances in methods to measure free energy changes in simulations of molecular...
Electronic structure calculations, such as those employing Kohn–Sham density functional theory or ab...
Computer simulations play an important role in the study of transformation processes of condensed ma...
International audienceComputer simulations play an important role in the study of transformation pro...
Machine learning encompasses tools and algorithms that are now becoming popular in almost all scient...
Designing molecules and materials with desired properties is an important prerequisite for advancing...
Machine learning techniques are being increasingly used as flexible non-linear fitting and predictio...
Computational capabilities are rapidly increasing, primarily because of the availability of GPU-base...
International audienceThe past decades have witnessed significant progress in the field of molecular...
Molecular dynamics (MD) simulations constitute the cornerstone of contemporary atomistic modeling in...
Accurate modelling of chemical and physical interactions is crucial for obtaining thermodynamic and ...
Abstract: Recently, the combination of state-of-the-art molecular mechanical force fields with conti...