We discuss piecewise smooth hybrid systems as models for regulatory networks in molecular biology. These systems involve both continuous and discrete variables. The discrete variables allow to switch on and off some of the molecular interactions in the model of the biological system. Piecewise smooth hybrid models are well adapted to approximate the dynamics of multiscale dissipative systems that occur in molecular biology. We show how to produce such models by a top down approach that use biological knowledge for a guided choice of important variables and interactions. Then we propose an algorithm for fitting parameters of the piecewise smooth models from data. We illustrate some of the possibilities of this approach by proposing hybrid ve...
Proceedings of the 2nd International Workshop on Static Analysis and Systems Biology (SASB 2011)Inte...
Gene regulatory networks (GRNs) have an important role in the field of synthetic biology as they mak...
Modeling of complex biological systems, especially at a molecular scale, is an emerging field of res...
In Proceedings HSB 2012, arXiv:1208.3151International audiencePiecewise smooth hybrid systems, invol...
International audienceBiological regulatory networks often give rise to new mathematical problems fo...
In Proceedings HSB 2013, arXiv:1308.5724Hybrid modeling provides an effective solution to cope with ...
The cell cycle is a complex biological system frequently investigated from a mathematical perspectiv...
Recent developments in understanding the various regulatory systems, especially the developments in ...
Gene regulatory networks control the response of living cells to changes in their environment. A cla...
International audienceGene regulatory networks control the response of living cells to changes in th...
International audienceGene regulatory networks control the response of living cells to changes in th...
Abstract — Recent advances of experimental techniques in bi-ology have led to the production of enor...
The main goal of this thesis was to investigate possible computational approaches useful to study th...
The capacity of cells to differentiate into specialized types is fundamental to the development of o...
La modélisation des systèmes biologiques, particulièrement à l'échelle moléculaire, est une probléma...
Proceedings of the 2nd International Workshop on Static Analysis and Systems Biology (SASB 2011)Inte...
Gene regulatory networks (GRNs) have an important role in the field of synthetic biology as they mak...
Modeling of complex biological systems, especially at a molecular scale, is an emerging field of res...
In Proceedings HSB 2012, arXiv:1208.3151International audiencePiecewise smooth hybrid systems, invol...
International audienceBiological regulatory networks often give rise to new mathematical problems fo...
In Proceedings HSB 2013, arXiv:1308.5724Hybrid modeling provides an effective solution to cope with ...
The cell cycle is a complex biological system frequently investigated from a mathematical perspectiv...
Recent developments in understanding the various regulatory systems, especially the developments in ...
Gene regulatory networks control the response of living cells to changes in their environment. A cla...
International audienceGene regulatory networks control the response of living cells to changes in th...
International audienceGene regulatory networks control the response of living cells to changes in th...
Abstract — Recent advances of experimental techniques in bi-ology have led to the production of enor...
The main goal of this thesis was to investigate possible computational approaches useful to study th...
The capacity of cells to differentiate into specialized types is fundamental to the development of o...
La modélisation des systèmes biologiques, particulièrement à l'échelle moléculaire, est une probléma...
Proceedings of the 2nd International Workshop on Static Analysis and Systems Biology (SASB 2011)Inte...
Gene regulatory networks (GRNs) have an important role in the field of synthetic biology as they mak...
Modeling of complex biological systems, especially at a molecular scale, is an emerging field of res...