New Zealand has lost over 90% of its former wetlands and many that remain are in a degraded state. Restoration projects are often impeded by the failure of native plants to establish back into non-native dominated communities. Phormium tenax is fast growing and acts a nurse plant in wetlands, accelerating the establishment of slower growing native woody species. The roles of below ground organisms are increasingly recognised as affecting plant community dynamics, and this study investigates the diversity of a group of pervasive organisms, the arbuscular mycorrhizal fungi (AMF), growing in symbiosis with Phormium tenax. Next generation sequencing was used to create two libraries to determine the sensitivity of coding and non-coding molecular...