The atmospheric neutrino flux represents a continuous source that can be exploited to infer properties about Cosmic Rays and neutrino oscillation physics. The JUNO observatory, a 20 kt liquid scintillator (LS) currently under construction in China, will be able to detect atmospheric neutrinos down to lower energies, with respect to Cherenkov detectors, given the large fiducial volume and the high light yield. The light produced in neutrino interactions with the LS will be collected by a double-system of photosensors: 18.000 20" PMTs and 25.000 3" PMTs. The LS detector is surrounded by a Cherenkov water pool, equipped with 2.400 20" PMTs, which is designed to reject atmospheric muons with high efficiency. The rock overburden above the experi...