Comparison of bacterial genomes obtained from second and third generation sequencing

This bachelor thesis deals with sequencing technologies with a focus on the second and third generation of sequencers and platforms Illumina Miseq and Oxford Nanopore Technologies MinION. There is a description of an assembly of genomes with an example of the assembly of 6 genomes of a bacteria Klebsiella pneumoniae and a quality testing of these genomes. The final part contains a theoretical description and a practical implementation of selected methods for comparison of the assembled genomes, which come from two different sequencing platforms