We present average performance results for dynamical inference problems in large networks, where a set of nodes is hidden while the time trajectories of the others are observed. Examples of this scenario can occur in signal transduction and gene regulation networks. We focus on the linear stochastic dynamics of continuous variables interacting via random Gaussian couplings of generic symmetry. We analyze the inference error, given by the variance of the posterior distribution over hidden paths, in the thermodynamic limit and as a function of the system parameters and the ratio α between the number of hidden and observed nodes. By applying Kalman filter recursions we find that the posterior dynamics is governed by an “effective” drift that i...
Many complex systems, ranging from migrating cells to animal groups, exhibit stochastic dynamics des...
Multiple lines of evidence support the notion that the brain performs probabilistic inference in mul...
Stochastic simulation algorithms provide a powerful means to understand complex biochemical processe...
We consider the problem of inferring the dynamics of unknown (i.e. hidden) nodes from a set of obser...
We consider the problem of a subnetwork of observed nodes embedded into a larger bulk of unknown (i....
National audienceIdentifying biological networks requires to develop first, models able to capture t...
Network inference has been extensively studied in several fields, such as systems biology and social...
Best Paper AwardInternational audienceOne way to avoid overfitting in machine learning is to use mod...
International audienceStatistical inference of biological networks such as gene regulatory networks,...
Many living and complex systems exhibit second-order emergent dynamics. Limited experimental access ...
Many complex systems operating far from the equilibrium exhibit stochastic dynamics that can be desc...
Multiple lines of evidence support the notion that the brain performs probabilistic inference in mul...
When analysing gene expression time series data an often overlooked but crucial aspect of the model ...
MOTIVATION: When analysing gene expression time series data, an often overlooked but crucial aspect ...
We analyze a hierarchy of three regimes for modeling gene regulation. The most complete model is a c...
Many complex systems, ranging from migrating cells to animal groups, exhibit stochastic dynamics des...
Multiple lines of evidence support the notion that the brain performs probabilistic inference in mul...
Stochastic simulation algorithms provide a powerful means to understand complex biochemical processe...
We consider the problem of inferring the dynamics of unknown (i.e. hidden) nodes from a set of obser...
We consider the problem of a subnetwork of observed nodes embedded into a larger bulk of unknown (i....
National audienceIdentifying biological networks requires to develop first, models able to capture t...
Network inference has been extensively studied in several fields, such as systems biology and social...
Best Paper AwardInternational audienceOne way to avoid overfitting in machine learning is to use mod...
International audienceStatistical inference of biological networks such as gene regulatory networks,...
Many living and complex systems exhibit second-order emergent dynamics. Limited experimental access ...
Many complex systems operating far from the equilibrium exhibit stochastic dynamics that can be desc...
Multiple lines of evidence support the notion that the brain performs probabilistic inference in mul...
When analysing gene expression time series data an often overlooked but crucial aspect of the model ...
MOTIVATION: When analysing gene expression time series data, an often overlooked but crucial aspect ...
We analyze a hierarchy of three regimes for modeling gene regulation. The most complete model is a c...
Many complex systems, ranging from migrating cells to animal groups, exhibit stochastic dynamics des...
Multiple lines of evidence support the notion that the brain performs probabilistic inference in mul...
Stochastic simulation algorithms provide a powerful means to understand complex biochemical processe...