Transposable elements (TEs) are significant genomic components which can be detected either through sequence homology against existing databases or de novo, with the latter potentially reducing the risk of underestimating TE abundance. Here, we describe the semi-automated generation of a de novo TE library using the newly developed EDTA pipeline and DeepTE classifier in a non-model teleost (Corydoras fulleri). Using both genomic and transcriptomic data, we assess this de novo pipeline's performance across four TE based metrics: (i) abundance, (ii) composition, (iii) fragmentation, and (iv) age distributions. We then compare the results to those found when using a curated teleost library (Danio rerio). We identify quantitative differences in...
Transposable elements (TEs) are mobile, repetitive DNA sequences that are almost ubiquitous in proka...
Transposable elements (TEs) have the ability to alter individual genomic landscapes and shape the co...
Transposable element (TE) science has been significantly influenced by the pioneering ideas of David...
Transposable elements (TEs) are significant genomic components which can be detected either through ...
Transposable elements (TEs) are significant genomic components which can be detected either through ...
BACKGROUND: Sequencing technology and assembly algorithms have matured to the point that high-qualit...
International audienceDNA derived from transposable elements (TEs) constitutes large parts of the ge...
DNA derived from transposable elements (TEs) constitutes large parts of the genomes of complex eukar...
Transposable elements (TEs) are DNA sequences with the capability to move within a genome. Whilst of...
Transposable elements are mobile genetic elements that have the ability to move around the genome, a...
Transposable elements (TEs) are an important source of genome diversity and play a crucial role in g...
Transposable elements (TEs) are mobile, repetitive DNA sequences that are almost ubiquitous in proka...
In recent years the advances in genomics allowed to understand the importance of Transposable Elemen...
© The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attributi...
This is an Open Access article distributed under the terms of the Creative Commons Attribution Licen...
Transposable elements (TEs) are mobile, repetitive DNA sequences that are almost ubiquitous in proka...
Transposable elements (TEs) have the ability to alter individual genomic landscapes and shape the co...
Transposable element (TE) science has been significantly influenced by the pioneering ideas of David...
Transposable elements (TEs) are significant genomic components which can be detected either through ...
Transposable elements (TEs) are significant genomic components which can be detected either through ...
BACKGROUND: Sequencing technology and assembly algorithms have matured to the point that high-qualit...
International audienceDNA derived from transposable elements (TEs) constitutes large parts of the ge...
DNA derived from transposable elements (TEs) constitutes large parts of the genomes of complex eukar...
Transposable elements (TEs) are DNA sequences with the capability to move within a genome. Whilst of...
Transposable elements are mobile genetic elements that have the ability to move around the genome, a...
Transposable elements (TEs) are an important source of genome diversity and play a crucial role in g...
Transposable elements (TEs) are mobile, repetitive DNA sequences that are almost ubiquitous in proka...
In recent years the advances in genomics allowed to understand the importance of Transposable Elemen...
© The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attributi...
This is an Open Access article distributed under the terms of the Creative Commons Attribution Licen...
Transposable elements (TEs) are mobile, repetitive DNA sequences that are almost ubiquitous in proka...
Transposable elements (TEs) have the ability to alter individual genomic landscapes and shape the co...
Transposable element (TE) science has been significantly influenced by the pioneering ideas of David...