Additional file 2 of X-CNV: genome-wide prediction of the pathogenicity of copy number variations

Supplementary Material for: A Genome-Wide Association Study to Identify Potential Germline Copy Number Variants for Sporadic Breast Cancer Susceptibility

Sapkota Y. (3135957)
Narasimhan A. (3135960)
Kumaran M. (3135951)
Sehrawat B.S. (3135963)
Damaraju S. (3135954)

September 2016

Breast cancer (BC) predisposition in populations arises from both genetic and nongenetic risk factor...

Statistical Methods for the Analysis of Copy Number Variation

Nguyen, Tan Hoang

January 2015

Copy number variation (CNV) is a type of genomic structural variation which has been associated with...

CNVs.

Kate Megquier (688328)
Jason Turner-Maier (535094)
Kathleen Morrill (3841369)
Xue Li (285380)
Jeremy Johnson (535080)
Elinor K. Karlsson (8334993)
Cheryl A. London (13783205)
Heather L. Gardner (13783208)

September 2022

Copy number variants and overlapping genes associated with each region called in each cell line. (XL...

Additional file 1 of X-CNV: genome-wide prediction of the pathogenicity of copy number variations

Li Zhang (8200)
Jingru Shi (7497245)
Jian Ouyang (179347)
Riquan Zhang (809813)
Yiran Tao (4101988)
Dongsheng Yuan (4047745)
Chengkai Lv (11294406)
Ruiyuan Wang (6038858)
Baitang Ning (138396)
Ruth Roberts (2901989)
Weida Tong (15158)
Zhichao Liu (191718)
Tieliu Shi (40518)

August 2021

Additional file 1. Table S1. The sample information of the natural population collected from dbVar a...

Germline copy number variation and cancer risk.

Kuiper, R.P.
Ligtenberg, M.J.L.
Hoogerbrugge, N.
Geurts van Kessel, A.H.M.

January 2010

Contains fulltext : 88483.pdf (publisher's version ) (Closed access)The human geno...

Characteristics of the germ-line Copy Number Variations (CNVs) in colorectal cancer patients

Werdyani, Salem

May 2016

INDELs and CNVs are types of structural variations. This project aimed to computationally predict a...

X-CNV: genome-wide prediction of the pathogenicity of copy number variations

Li Zhang
Jingru Shi
Jian Ouyang
Riquan Zhang
Yiran Tao
Dongsheng Yuan
Chengkai Lv
Ruiyuan Wang
Baitang Ning
Ruth Roberts
Weida Tong
Zhichao Liu
Tieliu Shi

August 2021

Abstract Background Gene copy number variations (CNVs) contribute to genetic diversity and disease p...

Germline variants and copy number variation (CNVs) identified and associated syndromes.

Lamis Yehia (750403)
Ying Ni (568701)
Kaitlin Sesock (5131163)
Farshad Niazi (3725080)
Benjamin Fletcher (644948)
Hannah Jin Lian Chen (5172437)
Thomas LaFramboise (60591)
Charis Eng (180844)

April 2018

<p>Germline variants and copy number variation (CNVs) identified and associated syndromes.</p

Copy number alterations and copy number variation in cancer: close encounters of the bad kind

Speleman, Franki
Kumps, Candy
Buysse, Karen
Poppe, Bruce
Menten, Björn
De Preter, Katleen

January 2008

Recent studies have unveiled copy number variants (CNVs) as an important source of genetic variation...

Additional file 3: of The molecular landscape of premenopausal breast cancer

Serena Liao (3582692)
Ryan Hartmaier (109111)
Kandace McGuire (3582695)
Shannon Puhalla (3582689)
Soumya Luthra (732484)
Uma Chandran (732485)
Tianzhou Ma (3582698)
Rohit Bhargava (562035)
Francesmary Modugno (757958)
Nancy Davidson (3512738)
Steve Benz (3582686)
Adrian Lee (3161067)
George Tseng (150934)
Steffi Oesterreich (109122)

August 2015

Copy number variation (CNV) GISTIC The Cancer Genome Atlas (TCGA). List of significant (q <0.25) amp...

Additional file 1: of Genomic aberrations in young and elderlyÂ breast cancer patients

Hatem Azim (3485501)
Bastien Nguyen (3485498)
Sylvain BrohĂŠe (3485504)
Gabriele Zoppoli (201733)
Christos Sotiriou (643)

October 2015

The independent association between age at diagnosis and chromosomal copy number variation (CNV) eve...

Additional file 2: Figure S1. of Genomic copy number variation analysis in multiple system atrophy

Yuka Hama (3483407)
Masataka Katsu (2947416)
Ichigaku Takigawa (185043)
Ichiro Yabe (3483413)
Masaaki Matsushima (3483395)
Ikuko Takahashi (3483401)
Takayuki Katayama (4631800)
Jun Utsumi (3483410)
Hidenao Sasaki (3483392)

November 2017

Gel electrophoresis of PCR products for verification analysis. Figure S2. Chromosomal location of CN...

Additional file 8: of Identification of novel candidate disease genes from de novo exonic copy number variants

Tomasz Gambin (39373)
Bo Yuan (26238)
Weimin Bi (162353)
Pengfei Liu (136115)
Jill Rosenfeld (2633302)
Zeynep Coban-Akdemir (3517055)
Amber Pursley (4454059)
Sandesh Nagamani (4454047)
Ronit Marom (4454017)
Sailaja Golla (4453999)
Lauren Dengle (4454041)
Heather Petrie (4454068)
Reuben Matalon (549396)
Lisa Emrick (4268914)
Monica Proud (4454053)
Diane Treadwell-Deering (4454035)
Hsiao-Tuan Chao (4454008)
Hannele Koillinen (4454011)
Chester Brown (4454065)
Nora Urraca (4454005)
Roya Mostafavi (4454062)
Saunder Bernes (4454038)
Elizabeth Roeder (627672)
Kimberly Nugent (4355395)
Patricia Bader (4454014)
Gary Bellus (4454020)
Michael Cummings (673809)
Hope Northrup (295678)
Myla Ashfaq (4454023)
Rachel Westman (4454044)
Robert Wildin (362170)
Anita Beck (4453996)
LaDonna Immken (4454026)
Lindsay Elton (4454056)
Shaun Varghese (4454032)
Edward Buchanan (4454029)
Laurence Faivre (397333)
Mathilde Lefebvre (3985739)
Christian Schaaf (3853036)
Magdalena Walkiewicz (4355383)
Yaping Yang (292220)
Sung-Hae Kang (163988)
Seema Lalani (3572948)
Carlos Bacino (3853051)
Arthur Beaudet (544136)
Amy Breman (4454002)
Janice Smith (3558284)
Sau Cheung (4454050)
James Lupski (3422270)
Ankita Patel (163987)
Chad Shaw (163990)
PaweĹ Stankiewicz (3487565)

September 2017

Supplementary figure presenting CNVs in CSMD1, including de novo (red), inherited (blue), and deleti...

DNA copy number variation: Main characteristics, evolutionary significance, and pathological aspects

Ondrej Pös
Jan Radvanszky
Gergely Buglyó
Zuzana Pös
Diana Rusnakova
Bálint Nagy
Tomas Szemes

October 2021

Copy number variants (CNVs) were the subject of extensive research in the past years. They are commo...

Additional file 3: Table S2. of Increased genomic burden of germline copy number variants is associated with early onset breast cancer: Australian breast cancer family registry

Logan Walker (3844042)
John Pearson (629146)
George Wiggins (3844039)
Graham Giles (521929)
John Hopper (218871)
Melissa Southey (81752)

March 2017

Taqman assays used for CNV assessment at 7 gene loci. Table S3. Cancer-predisposing genes disrupted ...

Supplementary Material for: A Genome-Wide Association Study to Identify Potential Germline Copy Number Variants for Sporadic Breast Cancer Susceptibility

Sapkota Y. (3135957)
Narasimhan A. (3135960)
Kumaran M. (3135951)
Sehrawat B.S. (3135963)
Damaraju S. (3135954)

September 2016

Breast cancer (BC) predisposition in populations arises from both genetic and nongenetic risk factor...

Statistical Methods for the Analysis of Copy Number Variation

Nguyen, Tan Hoang

January 2015

Copy number variation (CNV) is a type of genomic structural variation which has been associated with...

CNVs.

Kate Megquier (688328)
Jason Turner-Maier (535094)
Kathleen Morrill (3841369)
Xue Li (285380)
Jeremy Johnson (535080)
Elinor K. Karlsson (8334993)
Cheryl A. London (13783205)
Heather L. Gardner (13783208)

September 2022

Copy number variants and overlapping genes associated with each region called in each cell line. (XL...

Additional file 1 of X-CNV: genome-wide prediction of the pathogenicity of copy number variations

Li Zhang (8200)
Jingru Shi (7497245)
Jian Ouyang (179347)
Riquan Zhang (809813)
Yiran Tao (4101988)
Dongsheng Yuan (4047745)
Chengkai Lv (11294406)
Ruiyuan Wang (6038858)
Baitang Ning (138396)
Ruth Roberts (2901989)
Weida Tong (15158)
Zhichao Liu (191718)
Tieliu Shi (40518)

August 2021

Additional file 1. Table S1. The sample information of the natural population collected from dbVar a...

Germline copy number variation and cancer risk.

Kuiper, R.P.
Ligtenberg, M.J.L.
Hoogerbrugge, N.
Geurts van Kessel, A.H.M.

January 2010

Contains fulltext : 88483.pdf (publisher's version ) (Closed access)The human geno...

Characteristics of the germ-line Copy Number Variations (CNVs) in colorectal cancer patients

Werdyani, Salem

May 2016

INDELs and CNVs are types of structural variations. This project aimed to computationally predict a...

X-CNV: genome-wide prediction of the pathogenicity of copy number variations

Li Zhang
Jingru Shi
Jian Ouyang
Riquan Zhang
Yiran Tao
Dongsheng Yuan
Chengkai Lv
Ruiyuan Wang
Baitang Ning
Ruth Roberts
Weida Tong
Zhichao Liu
Tieliu Shi

August 2021

Abstract Background Gene copy number variations (CNVs) contribute to genetic diversity and disease p...

Germline variants and copy number variation (CNVs) identified and associated syndromes.

Lamis Yehia (750403)
Ying Ni (568701)
Kaitlin Sesock (5131163)
Farshad Niazi (3725080)
Benjamin Fletcher (644948)
Hannah Jin Lian Chen (5172437)
Thomas LaFramboise (60591)
Charis Eng (180844)

April 2018

<p>Germline variants and copy number variation (CNVs) identified and associated syndromes.</p

Copy number alterations and copy number variation in cancer: close encounters of the bad kind

Speleman, Franki
Kumps, Candy
Buysse, Karen
Poppe, Bruce
Menten, Björn
De Preter, Katleen

January 2008

Recent studies have unveiled copy number variants (CNVs) as an important source of genetic variation...

Additional file 3: of The molecular landscape of premenopausal breast cancer

Serena Liao (3582692)
Ryan Hartmaier (109111)
Kandace McGuire (3582695)
Shannon Puhalla (3582689)
Soumya Luthra (732484)
Uma Chandran (732485)
Tianzhou Ma (3582698)
Rohit Bhargava (562035)
Francesmary Modugno (757958)
Nancy Davidson (3512738)
Steve Benz (3582686)
Adrian Lee (3161067)
George Tseng (150934)
Steffi Oesterreich (109122)

August 2015

Copy number variation (CNV) GISTIC The Cancer Genome Atlas (TCGA). List of significant (q <0.25) amp...

Additional file 1: of Genomic aberrations in young and elderlyÂ breast cancer patients

Hatem Azim (3485501)
Bastien Nguyen (3485498)
Sylvain BrohĂŠe (3485504)
Gabriele Zoppoli (201733)
Christos Sotiriou (643)

October 2015

The independent association between age at diagnosis and chromosomal copy number variation (CNV) eve...

Additional file 2: Figure S1. of Genomic copy number variation analysis in multiple system atrophy

Yuka Hama (3483407)
Masataka Katsu (2947416)
Ichigaku Takigawa (185043)
Ichiro Yabe (3483413)
Masaaki Matsushima (3483395)
Ikuko Takahashi (3483401)
Takayuki Katayama (4631800)
Jun Utsumi (3483410)
Hidenao Sasaki (3483392)

November 2017

Gel electrophoresis of PCR products for verification analysis. Figure S2. Chromosomal location of CN...

Additional file 8: of Identification of novel candidate disease genes from de novo exonic copy number variants

Tomasz Gambin (39373)
Bo Yuan (26238)
Weimin Bi (162353)
Pengfei Liu (136115)
Jill Rosenfeld (2633302)
Zeynep Coban-Akdemir (3517055)
Amber Pursley (4454059)
Sandesh Nagamani (4454047)
Ronit Marom (4454017)
Sailaja Golla (4453999)
Lauren Dengle (4454041)
Heather Petrie (4454068)
Reuben Matalon (549396)
Lisa Emrick (4268914)
Monica Proud (4454053)
Diane Treadwell-Deering (4454035)
Hsiao-Tuan Chao (4454008)
Hannele Koillinen (4454011)
Chester Brown (4454065)
Nora Urraca (4454005)
Roya Mostafavi (4454062)
Saunder Bernes (4454038)
Elizabeth Roeder (627672)
Kimberly Nugent (4355395)
Patricia Bader (4454014)
Gary Bellus (4454020)
Michael Cummings (673809)
Hope Northrup (295678)
Myla Ashfaq (4454023)
Rachel Westman (4454044)
Robert Wildin (362170)
Anita Beck (4453996)
LaDonna Immken (4454026)
Lindsay Elton (4454056)
Shaun Varghese (4454032)
Edward Buchanan (4454029)
Laurence Faivre (397333)
Mathilde Lefebvre (3985739)
Christian Schaaf (3853036)
Magdalena Walkiewicz (4355383)
Yaping Yang (292220)
Sung-Hae Kang (163988)
Seema Lalani (3572948)
Carlos Bacino (3853051)
Arthur Beaudet (544136)
Amy Breman (4454002)
Janice Smith (3558284)
Sau Cheung (4454050)
James Lupski (3422270)
Ankita Patel (163987)
Chad Shaw (163990)
PaweĹ Stankiewicz (3487565)

September 2017

Supplementary figure presenting CNVs in CSMD1, including de novo (red), inherited (blue), and deleti...

DNA copy number variation: Main characteristics, evolutionary significance, and pathological aspects

Ondrej Pös
Jan Radvanszky
Gergely Buglyó
Zuzana Pös
Diana Rusnakova
Bálint Nagy
Tomas Szemes

October 2021

Copy number variants (CNVs) were the subject of extensive research in the past years. They are commo...

Additional file 3: Table S2. of Increased genomic burden of germline copy number variants is associated with early onset breast cancer: Australian breast cancer family registry

Logan Walker (3844042)
John Pearson (629146)
George Wiggins (3844039)
Graham Giles (521929)
John Hopper (218871)
Melissa Southey (81752)

March 2017

Taqman assays used for CNV assessment at 7 gene loci. Table S3. Cancer-predisposing genes disrupted ...

Supplementary Material for: A Genome-Wide Association Study to Identify Potential Germline Copy Number Variants for Sporadic Breast Cancer Susceptibility

Sapkota Y. (3135957)
Narasimhan A. (3135960)
Kumaran M. (3135951)
Sehrawat B.S. (3135963)
Damaraju S. (3135954)

September 2016

Breast cancer (BC) predisposition in populations arises from both genetic and nongenetic risk factor...

Statistical Methods for the Analysis of Copy Number Variation

Nguyen, Tan Hoang

January 2015

Copy number variation (CNV) is a type of genomic structural variation which has been associated with...

CNVs.

Kate Megquier (688328)
Jason Turner-Maier (535094)
Kathleen Morrill (3841369)
Xue Li (285380)
Jeremy Johnson (535080)
Elinor K. Karlsson (8334993)
Cheryl A. London (13783205)
Heather L. Gardner (13783208)

September 2022

Copy number variants and overlapping genes associated with each region called in each cell line. (XL...

Additional file 2 of X-CNV: genome-wide prediction of the pathogenicity of copy number variations

Abstract

Extracted data

Additional file 2 of X-CNV: genome-wide prediction of the pathogenicity of copy number variations

Abstract

Extracted data

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