Additional file 12 of Genome analyses of four Wolbachia strains and associated mitochondria of Rhagoletis cerasi expose cumulative modularity of cytoplasmic incompatibility factors and cytoplasmic hitchhiking across host populations

Additional file 12. wCer2 variant calling. Reference position refers to the wCer2 genome position after the 11 contigs were joined in order. RcerAS (sampled to 87 million reads) was mapped competitively to the genomes of wCer1, wCer2 and wCer5, respectively at 97% length and 97% similarity. Variants were called with a minimum cut-off of 35% frequency