Additional file 3 of Full-length transcriptome profiling reveals insight into the cold response of two kiwifruit genotypes (A. arguta) with contrasting freezing tolerances

Shihang Sun (6294056)
Miaomiao Lin (5278496)
Xiujuan Qi (1721029)
Jinyong Chen (5278490)
Hong Gu (68558)
Yunpeng Zhong (509592)
Leiming Sun (5278484)
Abid Muhammad (2938188)
Danfeng Bai (11263477)
Chungen Hu (5278487)
Jinbao Fang (5278493)

Publication date

August 2021

DOI

10.6084/m9.figshare.15153724.v1

Abstract

Additional file 3 Supplementary Fig. 3. Phylogenetic tree of candidate genes and homologous genes. (a) Beta-GC, (b) TPS5, (c) BAM3.1, (d) CBF3, (e) MYC2, and (f) MYB44

Extracted data

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Additional file 3 of Full-length transcriptome profiling reveals insight into the cold response of two kiwifruit genotypes (A. arguta) with contrasting freezing tolerances

Shihang Sun (6294056)
Miaomiao Lin (5278496)
Xiujuan Qi (1721029)
Jinyong Chen (5278490)
Hong Gu (68558)
Yunpeng Zhong (509592)
Leiming Sun (5278484)
Abid Muhammad (2938188)
Danfeng Bai (11263477)
Chungen Hu (5278487)
Jinbao Fang (5278493)

Open link

Publication date

August 2021

DOI

10.6084/m9.figshare.15153724.v1

Abstract

Additional file 3 Supplementary Fig. 3. Phylogenetic tree of candidate genes and homologous genes. (a) Beta-GC, (b) TPS5, (c) BAM3.1, (d) CBF3, (e) MYC2, and (f) MYB44

Extracted data

Peter McAtee (3490349)
Annette Richardson (3490346)
Niels Nieuwenhuizen (3490337)
Kularajathevan Gunaseelan (3490355)
Ling Hoong (3490343)
Xiuyin Chen (3490340)
Ross Atkinson (3490352)
Jeremy Burdon (3490331)
Karine David (3490334)
Robert Schaffer (470405)

December 2015

List of ethylene-related gene expression values mined from A. chinensis mRNA-Seq libraries. (PPTX 36...

Additional file 1 of Identification of key gene networks related to the freezing resistance of apricot kernel pistils by integrating hormone phenotypes and transcriptome profiles

Xiaojuan Liu (157559)
Huihui Xu (778437)
Dan Yu (214174)
Quanxin Bi (4796157)
Haiyan Yu (356393)
Libing Wang (170404)

November 2022

Additional file 1: Fig. S1. Clustering and PCA of transcriptomes of CsL and CtW. Fig. S2. Venn diagr...

Additional file 1: of A transcriptomic analysis of bermudagrass (Cynodon dactylon) provides novel insights into the basis of low temperature tolerance

Liang Chen (73736)
Jibiao Fan (697820)
Longxing Hu (422015)
Zhengrong Hu (770467)
Yan Xie (41714)
Yingzi Zhang (3571091)
Yanhong Lou (771806)
Eviatar Nevo (55671)
Jinmin Fu (422018)

September 2015

The phenotypic difference of cold-tolerant (R) and -sensitive(S) bermudagrass genotypes after cold t...

Additional file 2 of Full-length transcriptome profiling reveals insight into the cold response of two kiwifruit genotypes (A. arguta) with contrasting freezing tolerances

Shihang Sun (6294056)
Miaomiao Lin (5278496)
Xiujuan Qi (1721029)
Jinyong Chen (5278490)
Hong Gu (68558)
Yunpeng Zhong (509592)
Leiming Sun (5278484)
Abid Muhammad (2938188)
Danfeng Bai (11263477)
Chungen Hu (5278487)
Jinbao Fang (5278493)

August 2021

Additional file 2 Supplementary Fig. 2. KEGG functional classifications of all the unigenes

Additional file 8 of Full-length transcriptome profiling reveals insight into the cold response of two kiwifruit genotypes (A. arguta) with contrasting freezing tolerances

Shihang Sun (6294056)
Miaomiao Lin (5278496)
Xiujuan Qi (1721029)
Jinyong Chen (5278490)
Hong Gu (68558)
Yunpeng Zhong (509592)
Leiming Sun (5278484)
Abid Muhammad (2938188)
Danfeng Bai (11263477)
Chungen Hu (5278487)
Jinbao Fang (5278493)

August 2021

Additional file 8 Table S5. Primers used for quantitative real-time RT-PCR analysis

Additional file 4 of Full-length transcriptome profiling reveals insight into the cold response of two kiwifruit genotypes (A. arguta) with contrasting freezing tolerances

Shihang Sun (6294056)
Miaomiao Lin (5278496)
Xiujuan Qi (1721029)
Jinyong Chen (5278490)
Hong Gu (68558)
Yunpeng Zhong (509592)
Leiming Sun (5278484)
Abid Muhammad (2938188)
Danfeng Bai (11263477)
Chungen Hu (5278487)
Jinbao Fang (5278493)

August 2021

Additional file 4 Table S1. DEGs related to Starch and sucrose metabolism, MAPK signaling pathway, P...

Additional file 3: of Comparative transcriptome analysis reveals distinct ethylene–independent regulation of ripening in response to low temperature in kiwifruit

William Asiche (4991822)
Oscar Mitalo (4991810)
Yuka Kasahara (4991798)
Yasuaki Tosa (4991813)
Eric Mworia (4991804)
Willis Owino (4991801)
Koichiro Ushijima (4991807)
Ryohei Nakano (4991816)
Kentaro Yano (15286)
Yasutaka Kubo (4991819)

March 2018

Genes that were exclusively regulated by low temperature. Values for Harvest, Propylene, 20°CW4 and ...

Additional file 8 of Comparative transcriptome analysis reveals distinct ethylene–independent regulation of ripening in response to low temperature in kiwifruit

William Asiche (4991822)
Oscar Mitalo (4991810)
Yuka Kasahara (4991798)
Yasuaki Tosa (4991813)
Eric Mworia (4991804)
Willis Owino (4991801)
Koichiro Ushijima (4991807)
Ryohei Nakano (4991816)
Kentaro Yano (15286)
Yasutaka Kubo (4991819)

March 2018

Kiwifruit gene–specific primers used for Reverse Transcriptase–Quantitative PCR. Accession numbers s...

Additional file 4: of Comparative transcriptome analysis reveals distinct ethylene–independent regulation of ripening in response to low temperature in kiwifruit

William Asiche (4991822)
Oscar Mitalo (4991810)
Yuka Kasahara (4991798)
Yasuaki Tosa (4991813)
Eric Mworia (4991804)
Willis Owino (4991801)
Koichiro Ushijima (4991807)
Ryohei Nakano (4991816)
Kentaro Yano (15286)
Yasutaka Kubo (4991819)

March 2018

Genes that were regulated by either propylene or low temperature. Values for Harvest, Propylene, 20°...

Additional file 6: of Comparative transcriptome analysis reveals distinct ethylene–independent regulation of ripening in response to low temperature in kiwifruit

William Asiche (4991822)
Oscar Mitalo (4991810)
Yuka Kasahara (4991798)
Yasuaki Tosa (4991813)
Eric Mworia (4991804)
Willis Owino (4991801)
Koichiro Ushijima (4991807)
Ryohei Nakano (4991816)
Kentaro Yano (15286)
Yasutaka Kubo (4991819)

March 2018

Selected ripening–associated genes that were differentially regulated either by ethylene or low temp...

Additional file 5: of Comparative transcriptome analysis reveals distinct ethylene–independent regulation of ripening in response to low temperature in kiwifruit

William Asiche (4991822)
Oscar Mitalo (4991810)
Yuka Kasahara (4991798)
Yasuaki Tosa (4991813)
Eric Mworia (4991804)
Willis Owino (4991801)
Koichiro Ushijima (4991807)
Ryohei Nakano (4991816)
Kentaro Yano (15286)
Yasutaka Kubo (4991819)

March 2018

Genes that showed antagonistic expression patterns (either up–regulated by propylene but down–regula...

Copy number variants in kiwifruit <i>ETHYLENE RESPONSE FACTOR/APETALA2 (ERF/AP2)</i>-like genes show divergence in fruit ripening associated cold and ethylene responses in <i>C-REPEAT/DRE BINDING FACTOR</i>-like genes - Fig 5

Kularajathevan Gunaseelan (3490355)
Peter A. McAtee (6693866)
Simona Nardozza (5106626)
Paul Pidakala (6693869)
Ruiling Wang (6693872)
Karine David (3490334)
Jeremy Burdon (3490331)
Robert J. Schaffer (546644)

May 2019

A. RNA-seq expression analysis of CBF-like genes in Actinidia chinensis var. chinensis ‘Hort16A’ kiw...

Additional file 1: of Comparative transcriptome analysis reveals distinct ethylene–independent regulation of ripening in response to low temperature in kiwifruit

William Asiche (4991822)
Oscar Mitalo (4991810)
Yuka Kasahara (4991798)
Yasuaki Tosa (4991813)
Eric Mworia (4991804)
Willis Owino (4991801)
Koichiro Ushijima (4991807)
Ryohei Nakano (4991816)
Kentaro Yano (15286)
Yasutaka Kubo (4991819)

March 2018

Changes in fruit ripening characteristics of ‘Rainbow Red’ and ‘Hayward’ during storage at 20 °C and...

Additional file 3 of Identification of key gene networks related to the freezing resistance of apricot kernel pistils by integrating hormone phenotypes and transcriptome profiles

Xiaojuan Liu (157559)
Huihui Xu (778437)
Dan Yu (214174)
Quanxin Bi (4796157)
Haiyan Yu (356393)
Libing Wang (170404)

November 2022

Additional file 3: Table S4. The raw expression information of DEGs in two apricot kernel cultivars ...

Additional file 3: of The hybrid non-ethylene and ethylene ripening response in kiwifruit (Actinidia chinensis) is associated with differential regulation of MADS-box transcription factors

Peter McAtee (3490349)
Annette Richardson (3490346)
Niels Nieuwenhuizen (3490337)
Kularajathevan Gunaseelan (3490355)
Ling Hoong (3490343)
Xiuyin Chen (3490340)
Ross Atkinson (3490352)
Jeremy Burdon (3490331)
Karine David (3490334)
Robert Schaffer (470405)

December 2015

List of ethylene-related gene expression values mined from A. chinensis mRNA-Seq libraries. (PPTX 36...

Additional file 1 of Identification of key gene networks related to the freezing resistance of apricot kernel pistils by integrating hormone phenotypes and transcriptome profiles

Xiaojuan Liu (157559)
Huihui Xu (778437)
Dan Yu (214174)
Quanxin Bi (4796157)
Haiyan Yu (356393)
Libing Wang (170404)

November 2022

Additional file 1: Fig. S1. Clustering and PCA of transcriptomes of CsL and CtW. Fig. S2. Venn diagr...

Additional file 1: of A transcriptomic analysis of bermudagrass (Cynodon dactylon) provides novel insights into the basis of low temperature tolerance

Liang Chen (73736)
Jibiao Fan (697820)
Longxing Hu (422015)
Zhengrong Hu (770467)
Yan Xie (41714)
Yingzi Zhang (3571091)
Yanhong Lou (771806)
Eviatar Nevo (55671)
Jinmin Fu (422018)

September 2015

The phenotypic difference of cold-tolerant (R) and -sensitive(S) bermudagrass genotypes after cold t...

Additional file 2 of Full-length transcriptome profiling reveals insight into the cold response of two kiwifruit genotypes (A. arguta) with contrasting freezing tolerances

Shihang Sun (6294056)
Miaomiao Lin (5278496)
Xiujuan Qi (1721029)
Jinyong Chen (5278490)
Hong Gu (68558)
Yunpeng Zhong (509592)
Leiming Sun (5278484)
Abid Muhammad (2938188)
Danfeng Bai (11263477)
Chungen Hu (5278487)
Jinbao Fang (5278493)

August 2021

Additional file 2 Supplementary Fig. 2. KEGG functional classifications of all the unigenes

Additional file 8 of Full-length transcriptome profiling reveals insight into the cold response of two kiwifruit genotypes (A. arguta) with contrasting freezing tolerances

Shihang Sun (6294056)
Miaomiao Lin (5278496)
Xiujuan Qi (1721029)
Jinyong Chen (5278490)
Hong Gu (68558)
Yunpeng Zhong (509592)
Leiming Sun (5278484)
Abid Muhammad (2938188)
Danfeng Bai (11263477)
Chungen Hu (5278487)
Jinbao Fang (5278493)

August 2021

Additional file 8 Table S5. Primers used for quantitative real-time RT-PCR analysis

Additional file 4 of Full-length transcriptome profiling reveals insight into the cold response of two kiwifruit genotypes (A. arguta) with contrasting freezing tolerances

Shihang Sun (6294056)
Miaomiao Lin (5278496)
Xiujuan Qi (1721029)
Jinyong Chen (5278490)
Hong Gu (68558)
Yunpeng Zhong (509592)
Leiming Sun (5278484)
Abid Muhammad (2938188)
Danfeng Bai (11263477)
Chungen Hu (5278487)
Jinbao Fang (5278493)

August 2021

Additional file 4 Table S1. DEGs related to Starch and sucrose metabolism, MAPK signaling pathway, P...

Additional file 3: of Comparative transcriptome analysis reveals distinct ethylene–independent regulation of ripening in response to low temperature in kiwifruit

William Asiche (4991822)
Oscar Mitalo (4991810)
Yuka Kasahara (4991798)
Yasuaki Tosa (4991813)
Eric Mworia (4991804)
Willis Owino (4991801)
Koichiro Ushijima (4991807)
Ryohei Nakano (4991816)
Kentaro Yano (15286)
Yasutaka Kubo (4991819)

March 2018

Genes that were exclusively regulated by low temperature. Values for Harvest, Propylene, 20°CW4 and ...

Additional file 8 of Comparative transcriptome analysis reveals distinct ethylene–independent regulation of ripening in response to low temperature in kiwifruit

William Asiche (4991822)
Oscar Mitalo (4991810)
Yuka Kasahara (4991798)
Yasuaki Tosa (4991813)
Eric Mworia (4991804)
Willis Owino (4991801)
Koichiro Ushijima (4991807)
Ryohei Nakano (4991816)
Kentaro Yano (15286)
Yasutaka Kubo (4991819)

March 2018

Kiwifruit gene–specific primers used for Reverse Transcriptase–Quantitative PCR. Accession numbers s...

Additional file 4: of Comparative transcriptome analysis reveals distinct ethylene–independent regulation of ripening in response to low temperature in kiwifruit

William Asiche (4991822)
Oscar Mitalo (4991810)
Yuka Kasahara (4991798)
Yasuaki Tosa (4991813)
Eric Mworia (4991804)
Willis Owino (4991801)
Koichiro Ushijima (4991807)
Ryohei Nakano (4991816)
Kentaro Yano (15286)
Yasutaka Kubo (4991819)

March 2018

Genes that were regulated by either propylene or low temperature. Values for Harvest, Propylene, 20°...

Additional file 6: of Comparative transcriptome analysis reveals distinct ethylene–independent regulation of ripening in response to low temperature in kiwifruit

William Asiche (4991822)
Oscar Mitalo (4991810)
Yuka Kasahara (4991798)
Yasuaki Tosa (4991813)
Eric Mworia (4991804)
Willis Owino (4991801)
Koichiro Ushijima (4991807)
Ryohei Nakano (4991816)
Kentaro Yano (15286)
Yasutaka Kubo (4991819)

March 2018

Selected ripening–associated genes that were differentially regulated either by ethylene or low temp...

Additional file 5: of Comparative transcriptome analysis reveals distinct ethylene–independent regulation of ripening in response to low temperature in kiwifruit

William Asiche (4991822)
Oscar Mitalo (4991810)
Yuka Kasahara (4991798)
Yasuaki Tosa (4991813)
Eric Mworia (4991804)
Willis Owino (4991801)
Koichiro Ushijima (4991807)
Ryohei Nakano (4991816)
Kentaro Yano (15286)
Yasutaka Kubo (4991819)

March 2018

Genes that showed antagonistic expression patterns (either up–regulated by propylene but down–regula...

Kularajathevan Gunaseelan (3490355)
Peter A. McAtee (6693866)
Simona Nardozza (5106626)
Paul Pidakala (6693869)
Ruiling Wang (6693872)
Karine David (3490334)
Jeremy Burdon (3490331)
Robert J. Schaffer (546644)

May 2019

A. RNA-seq expression analysis of CBF-like genes in Actinidia chinensis var. chinensis ‘Hort16A’ kiw...

Additional file 1: of Comparative transcriptome analysis reveals distinct ethylene–independent regulation of ripening in response to low temperature in kiwifruit

William Asiche (4991822)
Oscar Mitalo (4991810)
Yuka Kasahara (4991798)
Yasuaki Tosa (4991813)
Eric Mworia (4991804)
Willis Owino (4991801)
Koichiro Ushijima (4991807)
Ryohei Nakano (4991816)
Kentaro Yano (15286)
Yasutaka Kubo (4991819)

March 2018

Changes in fruit ripening characteristics of ‘Rainbow Red’ and ‘Hayward’ during storage at 20 °C and...

Additional file 3 of Identification of key gene networks related to the freezing resistance of apricot kernel pistils by integrating hormone phenotypes and transcriptome profiles

Xiaojuan Liu (157559)
Huihui Xu (778437)
Dan Yu (214174)
Quanxin Bi (4796157)
Haiyan Yu (356393)
Libing Wang (170404)

November 2022

Additional file 3: Table S4. The raw expression information of DEGs in two apricot kernel cultivars ...

Additional file 3: of The hybrid non-ethylene and ethylene ripening response in kiwifruit (Actinidia chinensis) is associated with differential regulation of MADS-box transcription factors

Peter McAtee (3490349)
Annette Richardson (3490346)
Niels Nieuwenhuizen (3490337)
Kularajathevan Gunaseelan (3490355)
Ling Hoong (3490343)
Xiuyin Chen (3490340)
Ross Atkinson (3490352)
Jeremy Burdon (3490331)
Karine David (3490334)
Robert Schaffer (470405)

December 2015

List of ethylene-related gene expression values mined from A. chinensis mRNA-Seq libraries. (PPTX 36...

Additional file 1 of Identification of key gene networks related to the freezing resistance of apricot kernel pistils by integrating hormone phenotypes and transcriptome profiles

Xiaojuan Liu (157559)
Huihui Xu (778437)
Dan Yu (214174)
Quanxin Bi (4796157)
Haiyan Yu (356393)
Libing Wang (170404)

November 2022

Additional file 1: Fig. S1. Clustering and PCA of transcriptomes of CsL and CtW. Fig. S2. Venn diagr...

Additional file 1: of A transcriptomic analysis of bermudagrass (Cynodon dactylon) provides novel insights into the basis of low temperature tolerance

Liang Chen (73736)
Jibiao Fan (697820)
Longxing Hu (422015)
Zhengrong Hu (770467)
Yan Xie (41714)
Yingzi Zhang (3571091)
Yanhong Lou (771806)
Eviatar Nevo (55671)
Jinmin Fu (422018)

September 2015

The phenotypic difference of cold-tolerant (R) and -sensitive(S) bermudagrass genotypes after cold t...

Additional file 3 of Full-length transcriptome profiling reveals insight into the cold response of two kiwifruit genotypes (A. arguta) with contrasting freezing tolerances

Abstract

Extracted data

Additional file 3 of Full-length transcriptome profiling reveals insight into the cold response of two kiwifruit genotypes (A. arguta) with contrasting freezing tolerances

Abstract

Extracted data

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