Additional file 3 of Integrated miRNA and transcriptome profiling to explore the molecular determinism of convergent adaptation to corn in two lepidopteran pests of agriculture

Integrated miRNA and transcriptome profiling to explore the molecular determinism of convergent adaptation to corn in two lepidopteran pests of agriculture

Sylvie Gimenez
Imène Seninet
Marion Orsucci
Philippe Audiot
Nicolas Nègre
Kiwoong Nam
Réjane Streiff
Emmanuelle d’Alençon

August 2021

Abstract Background The degree to which adaptation to same environment is determined by similar mole...

Additional file 6: of Characterization and expression profiling of microRNAs in response to plant feeding in two host-plant strains of the lepidopteran pest Spodoptera frugiperda

Yves Moné (361940)
Sandra Nhim (5940560)
Sylvie Gimenez (19584)
Fabrice Legeai (65391)
Imène Seninet (5940569)
Hugues Parrinello (496525)
Nicolas Nègre (16371)
Emmanuelle d’Alençon (718796)

November 2018

Figure S3. MA-plots showing the relative expression of known or novel miR according to the genetic b...

Integrated miRNA and transcriptome profiling to explore the molecular determinism of convergent adaptation to corn in two lepidopteran pests of agriculture

Gimenez, Sylvie
Seninet, Imène
Orsucci, Marion
Audiot, Philippe
Nègre, Nicolas
Nam, Kiwoong
Streiff, Réjane
d'Alençon, Emmanuelle

August 2021

International audienceBackground: The degree to which adaptation to same environment is determined b...

Additional file 4 of Integrated miRNA and transcriptome profiling to explore the molecular determinism of convergent adaptation to corn in two lepidopteran pests of agriculture

Sylvie Gimenez (19584)
Imène Seninet (5940569)
Marion Orsucci (3201441)
Philippe Audiot (75413)
Nicolas Nègre (16371)
Kiwoong Nam (166772)
Réjane Streiff (140007)
Emmanuelle d’Alençon (718796)

August 2021

Additional file 4: Supplementary Figure 2. MA-plots showing the relative expression of known or nove...

Additional file 1 of Integrated miRNA and transcriptome profiling to explore the molecular determinism of convergent adaptation to corn in two lepidopteran pests of agriculture

Sylvie Gimenez (19584)
Imène Seninet (5940569)
Marion Orsucci (3201441)
Philippe Audiot (75413)
Nicolas Nègre (16371)
Kiwoong Nam (166772)
Réjane Streiff (140007)
Emmanuelle d’Alençon (718796)

August 2021

Additional file 1: Supplementary Table S1. Number of sequence reads in each small non coding RNAs li...

Additional file 15 of Integrated miRNA and transcriptome profiling to explore the molecular determinism of convergent adaptation to corn in two lepidopteran pests of agriculture

Sylvie Gimenez (19584)
Imène Seninet (5940569)
Marion Orsucci (3201441)
Philippe Audiot (75413)
Nicolas Nègre (16371)
Kiwoong Nam (166772)
Réjane Streiff (140007)
Emmanuelle d’Alençon (718796)

August 2021

Additional file 15: Supplementary Excel Table S10. Comparison of known miRs predicted in On and Sf-C

Additional file 2 of Integrated miRNA and transcriptome profiling to explore the molecular determinism of convergent adaptation to corn in two lepidopteran pests of agriculture

Sylvie Gimenez (19584)
Imène Seninet (5940569)
Marion Orsucci (3201441)
Philippe Audiot (75413)
Nicolas Nègre (16371)
Kiwoong Nam (166772)
Réjane Streiff (140007)
Emmanuelle d’Alençon (718796)

August 2021

Additional file 2: Supplementary Excel Table S2. Predictions of miR genes by mirDEEP2 in On and Os a...

Additional file 8 of Integrated miRNA and transcriptome profiling to explore the molecular determinism of convergent adaptation to corn in two lepidopteran pests of agriculture

Sylvie Gimenez (19584)
Imène Seninet (5940569)
Marion Orsucci (3201441)
Philippe Audiot (75413)
Nicolas Nègre (16371)
Kiwoong Nam (166772)
Réjane Streiff (140007)
Emmanuelle d’Alençon (718796)

August 2021

Additional file 8: Supplementary Excel Table S4. Relative expression resulting from DESEQ2 analysis ...

Additional file 14 of Integrated miRNA and transcriptome profiling to explore the molecular determinism of convergent adaptation to corn in two lepidopteran pests of agriculture

Sylvie Gimenez (19584)
Imène Seninet (5940569)
Marion Orsucci (3201441)
Philippe Audiot (75413)
Nicolas Nègre (16371)
Kiwoong Nam (166772)
Réjane Streiff (140007)
Emmanuelle d’Alençon (718796)

August 2021

Additional file 14: Supplementary Excel Table S9. Summary of DE miR gene targets shared between Ostr...

Additional file 10 of Integrated miRNA and transcriptome profiling to explore the molecular determinism of convergent adaptation to corn in two lepidopteran pests of agriculture

Sylvie Gimenez (19584)
Imène Seninet (5940569)
Marion Orsucci (3201441)
Philippe Audiot (75413)
Nicolas Nègre (16371)
Kiwoong Nam (166772)
Réjane Streiff (140007)
Emmanuelle d’Alençon (718796)

August 2021

Additional file 10: Supplementary Excel Table S5. List of gene target predictions of known miRs of O...

Additional file 12 of Integrated miRNA and transcriptome profiling to explore the molecular determinism of convergent adaptation to corn in two lepidopteran pests of agriculture

Sylvie Gimenez (19584)
Imène Seninet (5940569)
Marion Orsucci (3201441)
Philippe Audiot (75413)
Nicolas Nègre (16371)
Kiwoong Nam (166772)
Réjane Streiff (140007)
Emmanuelle d’Alençon (718796)

August 2021

Additional file 12: Supplementary Excel Table S7. List of DE target genes (in Os compared to On on c...

Additional file 11 of Integrated miRNA and transcriptome profiling to explore the molecular determinism of convergent adaptation to corn in two lepidopteran pests of agriculture

Sylvie Gimenez (19584)
Imène Seninet (5940569)
Marion Orsucci (3201441)
Philippe Audiot (75413)
Nicolas Nègre (16371)
Kiwoong Nam (166772)
Réjane Streiff (140007)
Emmanuelle d’Alençon (718796)

August 2021

Additional file 11: Supplementary Excel Table S6. List of DE target genes (In On fed on mugwort comp...

Additional file 9 of Integrated miRNA and transcriptome profiling to explore the molecular determinism of convergent adaptation to corn in two lepidopteran pests of agriculture

Sylvie Gimenez (19584)
Imène Seninet (5940569)
Marion Orsucci (3201441)
Philippe Audiot (75413)
Nicolas Nègre (16371)
Kiwoong Nam (166772)
Réjane Streiff (140007)
Emmanuelle d’Alençon (718796)

August 2021

Additional file 9: Supplementary Figure 5. Variation between samples (treatments, replicates) of lar...

Additional file 13 of Integrated miRNA and transcriptome profiling to explore the molecular determinism of convergent adaptation to corn in two lepidopteran pests of agriculture

Sylvie Gimenez (19584)
Imène Seninet (5940569)
Marion Orsucci (3201441)
Philippe Audiot (75413)
Nicolas Nègre (16371)
Kiwoong Nam (166772)
Réjane Streiff (140007)
Emmanuelle d’Alençon (718796)

August 2021

Additional file 13: Supplementary Excel Table S8. List of DE target genes (FDR < 0.05) of known miRs...

Integrated miRNA and transcriptome profiling to explore the molecular determinism of convergent adaptation to corn in two lepidopteran pests of agriculture

Gimenez, Sylvie
Seninet, Imène
Orsucci, Marion
Audiot, Philippe
Nègre, Nicolas
Nam, Kiwoong
Streiff, Réjane
d'Alençon, Emmanuelle

August 2021

Dataset for S. frugiperda RNAseq [1] is available in Array Express: E-MTAB-6540.Dataset for Ostrinia...

Integrated miRNA and transcriptome profiling to explore the molecular determinism of convergent adaptation to corn in two lepidopteran pests of agriculture

Sylvie Gimenez
Imène Seninet
Marion Orsucci
Philippe Audiot
Nicolas Nègre
Kiwoong Nam
Réjane Streiff
Emmanuelle d’Alençon

August 2021

Abstract Background The degree to which adaptation to same environment is determined by similar mole...

Additional file 6: of Characterization and expression profiling of microRNAs in response to plant feeding in two host-plant strains of the lepidopteran pest Spodoptera frugiperda

Yves Moné (361940)
Sandra Nhim (5940560)
Sylvie Gimenez (19584)
Fabrice Legeai (65391)
Imène Seninet (5940569)
Hugues Parrinello (496525)
Nicolas Nègre (16371)
Emmanuelle d’Alençon (718796)

November 2018

Figure S3. MA-plots showing the relative expression of known or novel miR according to the genetic b...

Integrated miRNA and transcriptome profiling to explore the molecular determinism of convergent adaptation to corn in two lepidopteran pests of agriculture

Gimenez, Sylvie
Seninet, Imène
Orsucci, Marion
Audiot, Philippe
Nègre, Nicolas
Nam, Kiwoong
Streiff, Réjane
d'Alençon, Emmanuelle

August 2021

International audienceBackground: The degree to which adaptation to same environment is determined b...

Additional file 4 of Integrated miRNA and transcriptome profiling to explore the molecular determinism of convergent adaptation to corn in two lepidopteran pests of agriculture

Sylvie Gimenez (19584)
Imène Seninet (5940569)
Marion Orsucci (3201441)
Philippe Audiot (75413)
Nicolas Nègre (16371)
Kiwoong Nam (166772)
Réjane Streiff (140007)
Emmanuelle d’Alençon (718796)

August 2021

Additional file 4: Supplementary Figure 2. MA-plots showing the relative expression of known or nove...

Additional file 1 of Integrated miRNA and transcriptome profiling to explore the molecular determinism of convergent adaptation to corn in two lepidopteran pests of agriculture

Sylvie Gimenez (19584)
Imène Seninet (5940569)
Marion Orsucci (3201441)
Philippe Audiot (75413)
Nicolas Nègre (16371)
Kiwoong Nam (166772)
Réjane Streiff (140007)
Emmanuelle d’Alençon (718796)

August 2021

Additional file 1: Supplementary Table S1. Number of sequence reads in each small non coding RNAs li...

Additional file 15 of Integrated miRNA and transcriptome profiling to explore the molecular determinism of convergent adaptation to corn in two lepidopteran pests of agriculture

Sylvie Gimenez (19584)
Imène Seninet (5940569)
Marion Orsucci (3201441)
Philippe Audiot (75413)
Nicolas Nègre (16371)
Kiwoong Nam (166772)
Réjane Streiff (140007)
Emmanuelle d’Alençon (718796)

August 2021

Additional file 15: Supplementary Excel Table S10. Comparison of known miRs predicted in On and Sf-C

Additional file 2 of Integrated miRNA and transcriptome profiling to explore the molecular determinism of convergent adaptation to corn in two lepidopteran pests of agriculture

Sylvie Gimenez (19584)
Imène Seninet (5940569)
Marion Orsucci (3201441)
Philippe Audiot (75413)
Nicolas Nègre (16371)
Kiwoong Nam (166772)
Réjane Streiff (140007)
Emmanuelle d’Alençon (718796)

August 2021

Additional file 2: Supplementary Excel Table S2. Predictions of miR genes by mirDEEP2 in On and Os a...

Additional file 8 of Integrated miRNA and transcriptome profiling to explore the molecular determinism of convergent adaptation to corn in two lepidopteran pests of agriculture

Sylvie Gimenez (19584)
Imène Seninet (5940569)
Marion Orsucci (3201441)
Philippe Audiot (75413)
Nicolas Nègre (16371)
Kiwoong Nam (166772)
Réjane Streiff (140007)
Emmanuelle d’Alençon (718796)

August 2021

Additional file 8: Supplementary Excel Table S4. Relative expression resulting from DESEQ2 analysis ...

Additional file 14 of Integrated miRNA and transcriptome profiling to explore the molecular determinism of convergent adaptation to corn in two lepidopteran pests of agriculture

Sylvie Gimenez (19584)
Imène Seninet (5940569)
Marion Orsucci (3201441)
Philippe Audiot (75413)
Nicolas Nègre (16371)
Kiwoong Nam (166772)
Réjane Streiff (140007)
Emmanuelle d’Alençon (718796)

August 2021

Additional file 14: Supplementary Excel Table S9. Summary of DE miR gene targets shared between Ostr...

Additional file 10 of Integrated miRNA and transcriptome profiling to explore the molecular determinism of convergent adaptation to corn in two lepidopteran pests of agriculture

Sylvie Gimenez (19584)
Imène Seninet (5940569)
Marion Orsucci (3201441)
Philippe Audiot (75413)
Nicolas Nègre (16371)
Kiwoong Nam (166772)
Réjane Streiff (140007)
Emmanuelle d’Alençon (718796)

August 2021

Additional file 10: Supplementary Excel Table S5. List of gene target predictions of known miRs of O...

Additional file 12 of Integrated miRNA and transcriptome profiling to explore the molecular determinism of convergent adaptation to corn in two lepidopteran pests of agriculture

Sylvie Gimenez (19584)
Imène Seninet (5940569)
Marion Orsucci (3201441)
Philippe Audiot (75413)
Nicolas Nègre (16371)
Kiwoong Nam (166772)
Réjane Streiff (140007)
Emmanuelle d’Alençon (718796)

August 2021

Additional file 12: Supplementary Excel Table S7. List of DE target genes (in Os compared to On on c...

Additional file 11 of Integrated miRNA and transcriptome profiling to explore the molecular determinism of convergent adaptation to corn in two lepidopteran pests of agriculture

Sylvie Gimenez (19584)
Imène Seninet (5940569)
Marion Orsucci (3201441)
Philippe Audiot (75413)
Nicolas Nègre (16371)
Kiwoong Nam (166772)
Réjane Streiff (140007)
Emmanuelle d’Alençon (718796)

August 2021

Additional file 11: Supplementary Excel Table S6. List of DE target genes (In On fed on mugwort comp...

Additional file 9 of Integrated miRNA and transcriptome profiling to explore the molecular determinism of convergent adaptation to corn in two lepidopteran pests of agriculture

Sylvie Gimenez (19584)
Imène Seninet (5940569)
Marion Orsucci (3201441)
Philippe Audiot (75413)
Nicolas Nègre (16371)
Kiwoong Nam (166772)
Réjane Streiff (140007)
Emmanuelle d’Alençon (718796)

August 2021

Additional file 9: Supplementary Figure 5. Variation between samples (treatments, replicates) of lar...

Additional file 13 of Integrated miRNA and transcriptome profiling to explore the molecular determinism of convergent adaptation to corn in two lepidopteran pests of agriculture

Sylvie Gimenez (19584)
Imène Seninet (5940569)
Marion Orsucci (3201441)
Philippe Audiot (75413)
Nicolas Nègre (16371)
Kiwoong Nam (166772)
Réjane Streiff (140007)
Emmanuelle d’Alençon (718796)

August 2021

Additional file 13: Supplementary Excel Table S8. List of DE target genes (FDR < 0.05) of known miRs...

Integrated miRNA and transcriptome profiling to explore the molecular determinism of convergent adaptation to corn in two lepidopteran pests of agriculture

Gimenez, Sylvie
Seninet, Imène
Orsucci, Marion
Audiot, Philippe
Nègre, Nicolas
Nam, Kiwoong
Streiff, Réjane
d'Alençon, Emmanuelle

August 2021

Dataset for S. frugiperda RNAseq [1] is available in Array Express: E-MTAB-6540.Dataset for Ostrinia...

Integrated miRNA and transcriptome profiling to explore the molecular determinism of convergent adaptation to corn in two lepidopteran pests of agriculture

Sylvie Gimenez
Imène Seninet
Marion Orsucci
Philippe Audiot
Nicolas Nègre
Kiwoong Nam
Réjane Streiff
Emmanuelle d’Alençon

August 2021

Abstract Background The degree to which adaptation to same environment is determined by similar mole...

Additional file 6: of Characterization and expression profiling of microRNAs in response to plant feeding in two host-plant strains of the lepidopteran pest Spodoptera frugiperda

Yves Moné (361940)
Sandra Nhim (5940560)
Sylvie Gimenez (19584)
Fabrice Legeai (65391)
Imène Seninet (5940569)
Hugues Parrinello (496525)
Nicolas Nègre (16371)
Emmanuelle d’Alençon (718796)

November 2018

Figure S3. MA-plots showing the relative expression of known or novel miR according to the genetic b...

Integrated miRNA and transcriptome profiling to explore the molecular determinism of convergent adaptation to corn in two lepidopteran pests of agriculture

Gimenez, Sylvie
Seninet, Imène
Orsucci, Marion
Audiot, Philippe
Nègre, Nicolas
Nam, Kiwoong
Streiff, Réjane
d'Alençon, Emmanuelle

August 2021

International audienceBackground: The degree to which adaptation to same environment is determined b...

Additional file 3 of Integrated miRNA and transcriptome profiling to explore the molecular determinism of convergent adaptation to corn in two lepidopteran pests of agriculture

Abstract

Extracted data

Additional file 3 of Integrated miRNA and transcriptome profiling to explore the molecular determinism of convergent adaptation to corn in two lepidopteran pests of agriculture

Abstract

Extracted data

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