Segmentation of MR images with intensity inhomogeneities

A statistical model to segment clinical magnetic resonance (MR) images in the presence of noise and intensity inhomogeneities is proposed. Inhomogeneities are considered to be multiplicative low-frequency variations of intensities that are due to the anomalies of the magnetic fields of the scanners. The measurements are modeled as a Gaussian mixture where inhomogeneities present a bias field in the distributions. The piecewise contiguous nature of the segmentation is modeled by a Markov random field (MRF). A greedy algorithm based on the iterative conditional modes (ICM) algorithm is used to find an optimal segmentation while estimating the model parameters. Results with simulated and hand-segmented images are presented to compare performance of the algorithm with other statistical methods. Segmentation results with MR head scans acquired from four different clinical scanners are presented