Thesis (Ph. D.)--Massachusetts Institute of Technology, Dept. of Mechanical Engineering, 2008.Includes bibliographical references (leaves 273-282).In the first part of this thesis, the mechanisms of nonlinear resonant interaction of surface-interfacial waves with a rippled bottom in a two-layer density stratified fluid in two dimensions is investigated via perturbation analyses and direct simulation. Three classes of Bragg resonances are found to exist if the nonlinear interactions up to third order in the wave/ripple steepness are considered. At second order, class I Bragg resonance occurs involving two surface and/or internal waves and one bottom ripple component. At third order, class II and III Bragg resonances occur involving resonant ...