Using PLINK for genome-wide association studies (GWAS) and data analysis

Renteria, Miguel E.
Cortes, Adrian
Medland, Sarah E.

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Publication date

January 2013

DOI

10.1007/978-1-62703-447-0_8

Publisher

Springer Science and Business Media LLC

ISSN

1064-3745

Citation count (estimate)

Abstract

Within this chapter we introduce the basic PLINK functions for reading in data, applying quality control, and running association analyses. Three worked examples are provided to illustrate: data management and assessment of population substructure, association analysis of a quantitative trait, and qualitative or case-control association analyses

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Using PLINK for genome-wide association studies (GWAS) and data analysis

Abstract

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Using PLINK for genome-wide association studies (GWAS) and data analysis

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