Add to ORKGThree high-performance versions of the Haploid Evolutionary Constructor program are presented (http://evol-constructor.bionet.nsc.ru). The software was designed for simulating the functioning and evolution of microbial communities. These high-performance versions are to be run on systems with shared and distributed memory, using CPU and/or GPU. Almost linear acceleration has been achieved on clusters and multi-core CPU. On GPU systems, the simulation time was reduced to several minutes (dozens of hours on CPU)
International audienceExperimental evolution, where fast replicating organisms are evolved in contro...
Current research in the field of computational biology often involves simulations on high-performanc...
The advent of genomic data from densely sampled bacterial populations has created a need for flexibl...
Bacteria can exchange genetic material, or acquire genes found in the environment. This process, gen...
In this study we present simulation system based on Gillespie algorithm for generating evolutionary ...
Agent based modeling uses interacting agents and a governing rule to understand a complex phenomenon...
Bacterial plasmids are extra-chromosomal, typically circular DNA elements that require a bacterial h...
Motivation: Microbial genomes undergo evolutionary processes such as gene family expansion and contr...
Ecological modelling can allow us to test hypotheses and answer questions in cases where empirical e...
This dissertation describes how to improve automated design and evolution in computers using the str...
Abstract Background There are several situations in population biology research where simulating DNA...
Bacteria are some of the most ubiquitous, simple and fastest evolving life forms in the planet, yet ...
The recent development of the Genetic and Evolutionary Computation field lead to a kaleidoscope of a...
We describe strategies for the construction of bacterial computing platforms by describing a number ...
This paper describes the development of an approach to the simulation of prokaryotic community activ...
International audienceExperimental evolution, where fast replicating organisms are evolved in contro...
Current research in the field of computational biology often involves simulations on high-performanc...
The advent of genomic data from densely sampled bacterial populations has created a need for flexibl...
Bacteria can exchange genetic material, or acquire genes found in the environment. This process, gen...
In this study we present simulation system based on Gillespie algorithm for generating evolutionary ...
Agent based modeling uses interacting agents and a governing rule to understand a complex phenomenon...
Bacterial plasmids are extra-chromosomal, typically circular DNA elements that require a bacterial h...
Motivation: Microbial genomes undergo evolutionary processes such as gene family expansion and contr...
Ecological modelling can allow us to test hypotheses and answer questions in cases where empirical e...
This dissertation describes how to improve automated design and evolution in computers using the str...
Abstract Background There are several situations in population biology research where simulating DNA...
Bacteria are some of the most ubiquitous, simple and fastest evolving life forms in the planet, yet ...
The recent development of the Genetic and Evolutionary Computation field lead to a kaleidoscope of a...
We describe strategies for the construction of bacterial computing platforms by describing a number ...
This paper describes the development of an approach to the simulation of prokaryotic community activ...
International audienceExperimental evolution, where fast replicating organisms are evolved in contro...
Current research in the field of computational biology often involves simulations on high-performanc...
The advent of genomic data from densely sampled bacterial populations has created a need for flexibl...