Whole genome sequencing of Mycobacterium tuberculosis complex for species identification, drug susceptibility testing, and epidemiological typing

Molecular typing of Mycobacterium tuberculosis complex the answers you can and cannot get

Beer, J.L. de

January 2018

Contains fulltext : 192525.pdf (publisher's version ) (Open Access)Radboud Univers...

Table_7_Whole Genome Sequencing of Mycobacterium tuberculosis Clinical Isolates From India Reveals Genetic Heterogeneity and Region-Specific Variations That Might Affect Drug Susceptibility.XLS

Jayshree Advani (1590295)
Renu Verma (3846433)
Oishi Chatterjee (5418254)
Praveen Kumar Pachouri (6398816)
Prashant Upadhyay (6398819)
Rajesh Singh (93902)
Jitendra Yadav (6398822)
Farah Naaz (6398825)
Raju Ravikumar (705697)
Shashidhar Buggi (3846442)
Mrutyunjay Suar (132783)
Umesh D. Gupta (210034)
Akhilesh Pandey (14293)
Devendra S. Chauhan (365445)
Srikanth Prasad Tripathy (3846424)
Harsha Gowda (841151)
T. S. Keshava Prasad (14292)

February 2019

Whole genome sequencing (WGS) of Mycobacterium tuberculosis has been constructive in understanding i...

Elucidation of drug resistant mutations of Mycobacterium tuberculosis by whole genome sequencing from North India

Sethi, S
Hao, Y
Brown, S
Walker, T
Yadav, R
Zaman, K
Aggarwal, A
Behera, D

January 2019

INTRODUCTION:Rapid diagnosis of drug resistant tuberculosis is required for better patient managemen...

Whole genome sequencing as the ultimate tool to diagnose tuberculosis.

Soolingen, D. van
Jajou, R.
Mulder, A.
Neeling, H. de

January 2016

Contains fulltext : 171954.pdf (publisher's version ) (Open Access

Understanding tuberculosis drug resistance, disease phenotype and transmission by mycobacterial genome analysis

Ruesen, C.J.

January 2019

Contains fulltext : 209056.pdf (publisher's version ) (Open Access)Radboud Univers...

Deciphering drug resistance in Mycobacterium tuberculosis using whole-genome sequencing: Progress, promise, and challenges

Cohen, Keira A. (author)
Manson, Abigail L. (author)
Desjardins, Christopher A. (author)
Abeel, T.E.P.M.F. (author)
Earl, Ashlee M. (author)

January 2019

Tuberculosis (TB) is a global infectious threat that is intensified by an increasing incidence of hi...

Image_1_Whole Genome Sequencing of Mycobacterium tuberculosis Clinical Isolates From India Reveals Genetic Heterogeneity and Region-Specific Variations That Might Affect Drug Susceptibility.TIF

Jayshree Advani (1590295)
Renu Verma (3846433)
Oishi Chatterjee (5418254)
Praveen Kumar Pachouri (6398816)
Prashant Upadhyay (6398819)
Rajesh Singh (93902)
Jitendra Yadav (6398822)
Farah Naaz (6398825)
Raju Ravikumar (705697)
Shashidhar Buggi (3846442)
Mrutyunjay Suar (132783)
Umesh D. Gupta (210034)
Akhilesh Pandey (14293)
Devendra S. Chauhan (365445)
Srikanth Prasad Tripathy (3846424)
Harsha Gowda (841151)
T. S. Keshava Prasad (14292)

February 2019

Whole genome sequencing (WGS) of Mycobacterium tuberculosis has been constructive in understanding i...

Table_4_Whole Genome Sequencing of Mycobacterium tuberculosis Clinical Isolates From India Reveals Genetic Heterogeneity and Region-Specific Variations That Might Affect Drug Susceptibility.XLS

Jayshree Advani (1590295)
Renu Verma (3846433)
Oishi Chatterjee (5418254)
Praveen Kumar Pachouri (6398816)
Prashant Upadhyay (6398819)
Rajesh Singh (93902)
Jitendra Yadav (6398822)
Farah Naaz (6398825)
Raju Ravikumar (705697)
Shashidhar Buggi (3846442)
Mrutyunjay Suar (132783)
Umesh D. Gupta (210034)
Akhilesh Pandey (14293)
Devendra S. Chauhan (365445)
Srikanth Prasad Tripathy (3846424)
Harsha Gowda (841151)
T. S. Keshava Prasad (14292)

February 2019

Whole genome sequencing (WGS) of Mycobacterium tuberculosis has been constructive in understanding i...

Role and value of whole genome sequencing in studying tuberculosis transmission.

Nikolayevskyy, Vlad
Niemann, Stefan
Anthony, Richard
Van Soolingen, Dick
Tagliani, Elisa
Ködmön, Csaba
van der Werf, Marieke J
Cirillo, Daniela Maria

April 2019

Tuberculosis (TB) remains a serious public health threat worldwide. Theoretically ultimate resolutio...

Integrating standardized whole genome sequence analysis with a global Mycobacterium tuberculosis antibiotic resistance knowledgebase

Ezewudo, M
Borens, A
Chiner-Oms, Á
Miotto, P
Chindelevitch, L
Starks, AM
Hanna, D
Liwski, R
Zignol, M
Gilpin, C
Niemann, S
Kohl, TA
Warren, RM
Crook, D
Gagneux, S
Hoffner, S
Rodrigues, C
Comas, I
Engelthaler, DM
Alland, D
Rigouts, L
Lange, C
Dheda, K
Hasan, R
McNerney, R
Cirillo, DM
Schito, M
Rodwell, TC
Posey, J

October 2018

Drug-resistant tuberculosis poses a persistent public health threat. The ReSeqTB platform is a colla...

Table_5_Whole Genome Sequencing of Mycobacterium tuberculosis Clinical Isolates From India Reveals Genetic Heterogeneity and Region-Specific Variations That Might Affect Drug Susceptibility.XLS

Jayshree Advani (1590295)
Renu Verma (3846433)
Oishi Chatterjee (5418254)
Praveen Kumar Pachouri (6398816)
Prashant Upadhyay (6398819)
Rajesh Singh (93902)
Jitendra Yadav (6398822)
Farah Naaz (6398825)
Raju Ravikumar (705697)
Shashidhar Buggi (3846442)
Mrutyunjay Suar (132783)
Umesh D. Gupta (210034)
Akhilesh Pandey (14293)
Devendra S. Chauhan (365445)
Srikanth Prasad Tripathy (3846424)
Harsha Gowda (841151)
T. S. Keshava Prasad (14292)

February 2019

Whole genome sequencing (WGS) of Mycobacterium tuberculosis has been constructive in understanding i...

Table_1_Whole Genome Sequencing of Mycobacterium tuberculosis Clinical Isolates From India Reveals Genetic Heterogeneity and Region-Specific Variations That Might Affect Drug Susceptibility.XLS

Jayshree Advani (1590295)
Renu Verma (3846433)
Oishi Chatterjee (5418254)
Praveen Kumar Pachouri (6398816)
Prashant Upadhyay (6398819)
Rajesh Singh (93902)
Jitendra Yadav (6398822)
Farah Naaz (6398825)
Raju Ravikumar (705697)
Shashidhar Buggi (3846442)
Mrutyunjay Suar (132783)
Umesh D. Gupta (210034)
Akhilesh Pandey (14293)
Devendra S. Chauhan (365445)
Srikanth Prasad Tripathy (3846424)
Harsha Gowda (841151)
T. S. Keshava Prasad (14292)

February 2019

Whole genome sequencing (WGS) of Mycobacterium tuberculosis has been constructive in understanding i...

Table_3_Whole Genome Sequencing of Mycobacterium tuberculosis Clinical Isolates From India Reveals Genetic Heterogeneity and Region-Specific Variations That Might Affect Drug Susceptibility.XLS

Jayshree Advani (1590295)
Renu Verma (3846433)
Oishi Chatterjee (5418254)
Praveen Kumar Pachouri (6398816)
Prashant Upadhyay (6398819)
Rajesh Singh (93902)
Jitendra Yadav (6398822)
Farah Naaz (6398825)
Raju Ravikumar (705697)
Shashidhar Buggi (3846442)
Mrutyunjay Suar (132783)
Umesh D. Gupta (210034)
Akhilesh Pandey (14293)
Devendra S. Chauhan (365445)
Srikanth Prasad Tripathy (3846424)
Harsha Gowda (841151)
T. S. Keshava Prasad (14292)

February 2019

Whole genome sequencing (WGS) of Mycobacterium tuberculosis has been constructive in understanding i...

Table_2_Whole Genome Sequencing of Mycobacterium tuberculosis Clinical Isolates From India Reveals Genetic Heterogeneity and Region-Specific Variations That Might Affect Drug Susceptibility.XLS

Jayshree Advani (1590295)
Renu Verma (3846433)
Oishi Chatterjee (5418254)
Praveen Kumar Pachouri (6398816)
Prashant Upadhyay (6398819)
Rajesh Singh (93902)
Jitendra Yadav (6398822)
Farah Naaz (6398825)
Raju Ravikumar (705697)
Shashidhar Buggi (3846442)
Mrutyunjay Suar (132783)
Umesh D. Gupta (210034)
Akhilesh Pandey (14293)
Devendra S. Chauhan (365445)
Srikanth Prasad Tripathy (3846424)
Harsha Gowda (841151)
T. S. Keshava Prasad (14292)

February 2019

Whole genome sequencing (WGS) of Mycobacterium tuberculosis has been constructive in understanding i...

Table_6_Whole Genome Sequencing of Mycobacterium tuberculosis Clinical Isolates From India Reveals Genetic Heterogeneity and Region-Specific Variations That Might Affect Drug Susceptibility.XLS

Jayshree Advani (1590295)
Renu Verma (3846433)
Oishi Chatterjee (5418254)
Praveen Kumar Pachouri (6398816)
Prashant Upadhyay (6398819)
Rajesh Singh (93902)
Jitendra Yadav (6398822)
Farah Naaz (6398825)
Raju Ravikumar (705697)
Shashidhar Buggi (3846442)
Mrutyunjay Suar (132783)
Umesh D. Gupta (210034)
Akhilesh Pandey (14293)
Devendra S. Chauhan (365445)
Srikanth Prasad Tripathy (3846424)
Harsha Gowda (841151)
T. S. Keshava Prasad (14292)

February 2019

Whole genome sequencing (WGS) of Mycobacterium tuberculosis has been constructive in understanding i...

Molecular typing of Mycobacterium tuberculosis complex the answers you can and cannot get

Beer, J.L. de

January 2018

Contains fulltext : 192525.pdf (publisher's version ) (Open Access)Radboud Univers...

Table_7_Whole Genome Sequencing of Mycobacterium tuberculosis Clinical Isolates From India Reveals Genetic Heterogeneity and Region-Specific Variations That Might Affect Drug Susceptibility.XLS

Jayshree Advani (1590295)
Renu Verma (3846433)
Oishi Chatterjee (5418254)
Praveen Kumar Pachouri (6398816)
Prashant Upadhyay (6398819)
Rajesh Singh (93902)
Jitendra Yadav (6398822)
Farah Naaz (6398825)
Raju Ravikumar (705697)
Shashidhar Buggi (3846442)
Mrutyunjay Suar (132783)
Umesh D. Gupta (210034)
Akhilesh Pandey (14293)
Devendra S. Chauhan (365445)
Srikanth Prasad Tripathy (3846424)
Harsha Gowda (841151)
T. S. Keshava Prasad (14292)

February 2019

Whole genome sequencing (WGS) of Mycobacterium tuberculosis has been constructive in understanding i...

Elucidation of drug resistant mutations of Mycobacterium tuberculosis by whole genome sequencing from North India

Sethi, S
Hao, Y
Brown, S
Walker, T
Yadav, R
Zaman, K
Aggarwal, A
Behera, D

January 2019

INTRODUCTION:Rapid diagnosis of drug resistant tuberculosis is required for better patient managemen...

Whole genome sequencing as the ultimate tool to diagnose tuberculosis.

Soolingen, D. van
Jajou, R.
Mulder, A.
Neeling, H. de

January 2016

Contains fulltext : 171954.pdf (publisher's version ) (Open Access

Understanding tuberculosis drug resistance, disease phenotype and transmission by mycobacterial genome analysis

Ruesen, C.J.

January 2019

Contains fulltext : 209056.pdf (publisher's version ) (Open Access)Radboud Univers...

Deciphering drug resistance in Mycobacterium tuberculosis using whole-genome sequencing: Progress, promise, and challenges

Cohen, Keira A. (author)
Manson, Abigail L. (author)
Desjardins, Christopher A. (author)
Abeel, T.E.P.M.F. (author)
Earl, Ashlee M. (author)

January 2019

Tuberculosis (TB) is a global infectious threat that is intensified by an increasing incidence of hi...

Image_1_Whole Genome Sequencing of Mycobacterium tuberculosis Clinical Isolates From India Reveals Genetic Heterogeneity and Region-Specific Variations That Might Affect Drug Susceptibility.TIF

Jayshree Advani (1590295)
Renu Verma (3846433)
Oishi Chatterjee (5418254)
Praveen Kumar Pachouri (6398816)
Prashant Upadhyay (6398819)
Rajesh Singh (93902)
Jitendra Yadav (6398822)
Farah Naaz (6398825)
Raju Ravikumar (705697)
Shashidhar Buggi (3846442)
Mrutyunjay Suar (132783)
Umesh D. Gupta (210034)
Akhilesh Pandey (14293)
Devendra S. Chauhan (365445)
Srikanth Prasad Tripathy (3846424)
Harsha Gowda (841151)
T. S. Keshava Prasad (14292)

February 2019

Whole genome sequencing (WGS) of Mycobacterium tuberculosis has been constructive in understanding i...

Table_4_Whole Genome Sequencing of Mycobacterium tuberculosis Clinical Isolates From India Reveals Genetic Heterogeneity and Region-Specific Variations That Might Affect Drug Susceptibility.XLS

Jayshree Advani (1590295)
Renu Verma (3846433)
Oishi Chatterjee (5418254)
Praveen Kumar Pachouri (6398816)
Prashant Upadhyay (6398819)
Rajesh Singh (93902)
Jitendra Yadav (6398822)
Farah Naaz (6398825)
Raju Ravikumar (705697)
Shashidhar Buggi (3846442)
Mrutyunjay Suar (132783)
Umesh D. Gupta (210034)
Akhilesh Pandey (14293)
Devendra S. Chauhan (365445)
Srikanth Prasad Tripathy (3846424)
Harsha Gowda (841151)
T. S. Keshava Prasad (14292)

February 2019

Whole genome sequencing (WGS) of Mycobacterium tuberculosis has been constructive in understanding i...

Role and value of whole genome sequencing in studying tuberculosis transmission.

Nikolayevskyy, Vlad
Niemann, Stefan
Anthony, Richard
Van Soolingen, Dick
Tagliani, Elisa
Ködmön, Csaba
van der Werf, Marieke J
Cirillo, Daniela Maria

April 2019

Tuberculosis (TB) remains a serious public health threat worldwide. Theoretically ultimate resolutio...

Integrating standardized whole genome sequence analysis with a global Mycobacterium tuberculosis antibiotic resistance knowledgebase

Ezewudo, M
Borens, A
Chiner-Oms, Á
Miotto, P
Chindelevitch, L
Starks, AM
Hanna, D
Liwski, R
Zignol, M
Gilpin, C
Niemann, S
Kohl, TA
Warren, RM
Crook, D
Gagneux, S
Hoffner, S
Rodrigues, C
Comas, I
Engelthaler, DM
Alland, D
Rigouts, L
Lange, C
Dheda, K
Hasan, R
McNerney, R
Cirillo, DM
Schito, M
Rodwell, TC
Posey, J

October 2018

Drug-resistant tuberculosis poses a persistent public health threat. The ReSeqTB platform is a colla...

Table_5_Whole Genome Sequencing of Mycobacterium tuberculosis Clinical Isolates From India Reveals Genetic Heterogeneity and Region-Specific Variations That Might Affect Drug Susceptibility.XLS

Jayshree Advani (1590295)
Renu Verma (3846433)
Oishi Chatterjee (5418254)
Praveen Kumar Pachouri (6398816)
Prashant Upadhyay (6398819)
Rajesh Singh (93902)
Jitendra Yadav (6398822)
Farah Naaz (6398825)
Raju Ravikumar (705697)
Shashidhar Buggi (3846442)
Mrutyunjay Suar (132783)
Umesh D. Gupta (210034)
Akhilesh Pandey (14293)
Devendra S. Chauhan (365445)
Srikanth Prasad Tripathy (3846424)
Harsha Gowda (841151)
T. S. Keshava Prasad (14292)

February 2019

Whole genome sequencing (WGS) of Mycobacterium tuberculosis has been constructive in understanding i...

Table_1_Whole Genome Sequencing of Mycobacterium tuberculosis Clinical Isolates From India Reveals Genetic Heterogeneity and Region-Specific Variations That Might Affect Drug Susceptibility.XLS

Jayshree Advani (1590295)
Renu Verma (3846433)
Oishi Chatterjee (5418254)
Praveen Kumar Pachouri (6398816)
Prashant Upadhyay (6398819)
Rajesh Singh (93902)
Jitendra Yadav (6398822)
Farah Naaz (6398825)
Raju Ravikumar (705697)
Shashidhar Buggi (3846442)
Mrutyunjay Suar (132783)
Umesh D. Gupta (210034)
Akhilesh Pandey (14293)
Devendra S. Chauhan (365445)
Srikanth Prasad Tripathy (3846424)
Harsha Gowda (841151)
T. S. Keshava Prasad (14292)

February 2019

Whole genome sequencing (WGS) of Mycobacterium tuberculosis has been constructive in understanding i...

Table_3_Whole Genome Sequencing of Mycobacterium tuberculosis Clinical Isolates From India Reveals Genetic Heterogeneity and Region-Specific Variations That Might Affect Drug Susceptibility.XLS

Jayshree Advani (1590295)
Renu Verma (3846433)
Oishi Chatterjee (5418254)
Praveen Kumar Pachouri (6398816)
Prashant Upadhyay (6398819)
Rajesh Singh (93902)
Jitendra Yadav (6398822)
Farah Naaz (6398825)
Raju Ravikumar (705697)
Shashidhar Buggi (3846442)
Mrutyunjay Suar (132783)
Umesh D. Gupta (210034)
Akhilesh Pandey (14293)
Devendra S. Chauhan (365445)
Srikanth Prasad Tripathy (3846424)
Harsha Gowda (841151)
T. S. Keshava Prasad (14292)

February 2019

Whole genome sequencing (WGS) of Mycobacterium tuberculosis has been constructive in understanding i...

Table_2_Whole Genome Sequencing of Mycobacterium tuberculosis Clinical Isolates From India Reveals Genetic Heterogeneity and Region-Specific Variations That Might Affect Drug Susceptibility.XLS

Jayshree Advani (1590295)
Renu Verma (3846433)
Oishi Chatterjee (5418254)
Praveen Kumar Pachouri (6398816)
Prashant Upadhyay (6398819)
Rajesh Singh (93902)
Jitendra Yadav (6398822)
Farah Naaz (6398825)
Raju Ravikumar (705697)
Shashidhar Buggi (3846442)
Mrutyunjay Suar (132783)
Umesh D. Gupta (210034)
Akhilesh Pandey (14293)
Devendra S. Chauhan (365445)
Srikanth Prasad Tripathy (3846424)
Harsha Gowda (841151)
T. S. Keshava Prasad (14292)

February 2019

Whole genome sequencing (WGS) of Mycobacterium tuberculosis has been constructive in understanding i...

Table_6_Whole Genome Sequencing of Mycobacterium tuberculosis Clinical Isolates From India Reveals Genetic Heterogeneity and Region-Specific Variations That Might Affect Drug Susceptibility.XLS

Jayshree Advani (1590295)
Renu Verma (3846433)
Oishi Chatterjee (5418254)
Praveen Kumar Pachouri (6398816)
Prashant Upadhyay (6398819)
Rajesh Singh (93902)
Jitendra Yadav (6398822)
Farah Naaz (6398825)
Raju Ravikumar (705697)
Shashidhar Buggi (3846442)
Mrutyunjay Suar (132783)
Umesh D. Gupta (210034)
Akhilesh Pandey (14293)
Devendra S. Chauhan (365445)
Srikanth Prasad Tripathy (3846424)
Harsha Gowda (841151)
T. S. Keshava Prasad (14292)

February 2019

Whole genome sequencing (WGS) of Mycobacterium tuberculosis has been constructive in understanding i...

Molecular typing of Mycobacterium tuberculosis complex the answers you can and cannot get

Beer, J.L. de

January 2018

Contains fulltext : 192525.pdf (publisher's version ) (Open Access)Radboud Univers...

Table_7_Whole Genome Sequencing of Mycobacterium tuberculosis Clinical Isolates From India Reveals Genetic Heterogeneity and Region-Specific Variations That Might Affect Drug Susceptibility.XLS

Jayshree Advani (1590295)
Renu Verma (3846433)
Oishi Chatterjee (5418254)
Praveen Kumar Pachouri (6398816)
Prashant Upadhyay (6398819)
Rajesh Singh (93902)
Jitendra Yadav (6398822)
Farah Naaz (6398825)
Raju Ravikumar (705697)
Shashidhar Buggi (3846442)
Mrutyunjay Suar (132783)
Umesh D. Gupta (210034)
Akhilesh Pandey (14293)
Devendra S. Chauhan (365445)
Srikanth Prasad Tripathy (3846424)
Harsha Gowda (841151)
T. S. Keshava Prasad (14292)

February 2019

Whole genome sequencing (WGS) of Mycobacterium tuberculosis has been constructive in understanding i...

Elucidation of drug resistant mutations of Mycobacterium tuberculosis by whole genome sequencing from North India

Sethi, S
Hao, Y
Brown, S
Walker, T
Yadav, R
Zaman, K
Aggarwal, A
Behera, D

January 2019

INTRODUCTION:Rapid diagnosis of drug resistant tuberculosis is required for better patient managemen...

Whole genome sequencing of Mycobacterium tuberculosis complex for species identification, drug susceptibility testing, and epidemiological typing

Abstract

Extracted data

Whole genome sequencing of Mycobacterium tuberculosis complex for species identification, drug susceptibility testing, and epidemiological typing

Abstract

Extracted data

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