Two surveys were conducted in the Mozambique Channel in November 2009 and April/May 2010 to study the influence of mesoscale eddies on the zooplanktonic component of the ecosystem. Three complementary methods were used to sample zooplankton: (1) hydro-acoustics with a TAPS((TM)) multi-frequency zooplankton profiler; (2) in situ biological sampling using a Multinet with samples processed via the classical settled biovolume technique; (3) ZooScan image analysis which determines biovolume, size and taxonomic composition. This approach presented an ideal opportunity to compare the results of these different methods which highlighted a large overlap in their detectable size range. Each method favoured a particular size fraction of the population...