International audienceProperty structure and variability of the Indonesian Throughflow Water in the major outflow straits (Lombok, Ombai and Timor) are revised from newly available data sets and output from a numerical model. Emphasis is put on the upper layers of the Indonesian Throughflow that impacts the heat and freshwater fluxes of the South Equatorial Current in the Indian Ocean. During the April-June monsoon transition the salinity maximum signature of the North Pacific thermocline water is strongly attenuated. This freshening of the thermocline layer is more intense in Ombai and is related to the supply of fresh near-surface Java Sea water that is drawn eastward by surface monsoon currents and subject to strong diapycnal mixing. The...