The hybrid particle-field molecular dynamics method is an efficient alternative to standard particle-based coarse grained approaches. In this work, we propose an automated protocol for optimisation of the effective parameters that define the interaction energy density functional, based on Bayesian optimisation. The machine-learning protocol makes use of an arbitrary fitness function defined upon a set of observables of relevance, which are optimally matched by an iterative process. Employing phospholipid bilayers as test systems, we demonstrate that the parameters obtained through our protocol are able to reproduce reference data better than currently employed sets derived by Flory-Huggins models. The optimisation procedure is robust and yi...
Simulating the dynamics of ions near polarizable nanoparticles (NPs) using coarse-grained models is ...
Last year, at least 30,000 scientific papers used the Kohn-Sham scheme of density functional theory ...
Machine learning (ML) is an increasingly popular method to discover the structure and information be...
Hybrid particle–field methods couple coarse-grained particles through a density field-based intermol...
The demands on the accuracy of force fields for classical molecular dynamics simulations are steadil...
Accurate modelling of chemical and physical interactions is crucial for obtaining thermodynamic and ...
Highly accurate force fields are a mandatory requirement to generate predictive simulations. Here we...
In this work, different global optimization techniques are assessed for the automated development of...
Molecular dynamics (MD) simulations constitute the cornerstone of contemporary atomistic modeling in...
Quantum mechanics/molecular mechanics (QM/MM) molecular dynamics (MD) simulations have been develope...
In the framework of a recently developed scheme for a hybrid particle-field simulation technique whe...
This paper gives an overview of the coarse-grained models of phospholipids recently developed by the...
Hybrid particle–field molecular dynamics combines standard molecular potentials with density-field m...
Thesis (Master's)--University of Washington, 2021Understanding molecules and molecular interactions ...
Machine learning (ML) approximations to density functional theory (DFT) potential energy surfaces (P...
Simulating the dynamics of ions near polarizable nanoparticles (NPs) using coarse-grained models is ...
Last year, at least 30,000 scientific papers used the Kohn-Sham scheme of density functional theory ...
Machine learning (ML) is an increasingly popular method to discover the structure and information be...
Hybrid particle–field methods couple coarse-grained particles through a density field-based intermol...
The demands on the accuracy of force fields for classical molecular dynamics simulations are steadil...
Accurate modelling of chemical and physical interactions is crucial for obtaining thermodynamic and ...
Highly accurate force fields are a mandatory requirement to generate predictive simulations. Here we...
In this work, different global optimization techniques are assessed for the automated development of...
Molecular dynamics (MD) simulations constitute the cornerstone of contemporary atomistic modeling in...
Quantum mechanics/molecular mechanics (QM/MM) molecular dynamics (MD) simulations have been develope...
In the framework of a recently developed scheme for a hybrid particle-field simulation technique whe...
This paper gives an overview of the coarse-grained models of phospholipids recently developed by the...
Hybrid particle–field molecular dynamics combines standard molecular potentials with density-field m...
Thesis (Master's)--University of Washington, 2021Understanding molecules and molecular interactions ...
Machine learning (ML) approximations to density functional theory (DFT) potential energy surfaces (P...
Simulating the dynamics of ions near polarizable nanoparticles (NPs) using coarse-grained models is ...
Last year, at least 30,000 scientific papers used the Kohn-Sham scheme of density functional theory ...
Machine learning (ML) is an increasingly popular method to discover the structure and information be...