Table S1. Related to Figure 5. Gene lists associated with GO analysis. Lists of up-regulated and down-regulated genes comparing Isotype control mAb versus COV2-2050 D+1, COV2-2050 D+1 versus COV2-2050 LALA-PG D+1, Isotype control mAb versus COV2-2050 D+2, and COV2-2050 D+2 versus COV2-2050 LALA-PG D+2 in the top pathways identified through Gene Ontology analysis. Associated q-value and fold-change values are shown. Table S2. Related to Figure 5. Gene lists associated with CompBio analysis. Lists of up-regulated and down-regulated genes comparing Isotype control mAb versus COV2-2050 D+1, COV2-2050 D+1 versus COV2-2050 LALA-PG D+1, Isotype control mAb versus COV2-2050 D+2, and COV2-2050 D+2 versus COV2-2050 LALA-PG D+2 in the top pathways ...
Supplemental Table Legends: Table S1. Antibody manufacturers and clones Table S2. Significant dif...
<p>Overall, greater numbers of host genes were upregulated and symbiont genes were downregulated by ...
Outline of the process for integrating and visualizing analysis of gene signature and ontology enric...
Table 2 (Supplemental): Complete data for all 100 recurrent expression programs (EPs) discovered by ...
Table S1: Post-trimming and mapping results to reference genome for all groups, Table S2: Differenti...
List of Up-regulated Differential Expressed Genes (DEGs) and List of Down-regulated Differential...
List of 1655 genes with a negative jGRP statistic meaning a down-regulation in LUAD tissues relative...
Table S1. Pathway Enrichment Analysis of Upregulated Genes. Table S2. Pathway Enrichment Analysis of...
Genes to gene ontology (GO) annotation of all significant genes (FDR < 5%) with FC > 1.5 from the DG...
Supplementary figures and tables. Figure S1: Comparison of thresholds to retrieve the number of comm...
PARADIGM analysis in The Cancer Genome Atlas (TCGA). Table S1. Pathways detected by gene set enrichm...
Supplementary Tables. This file contains 5 supplementary tables for this paper. Table S1. List of 4T...
Relates to Fig. 8b. Integrated gene signature and ontology enrichments for FGL2 focus gene analysis...
Outline of meta-profile generation using COO classification. Upper panel: the data sets used. Please...
Table S1 contains Bowtie2 mapping statistics for the experimental samples. Table S2 contains the dif...
Supplemental Table Legends: Table S1. Antibody manufacturers and clones Table S2. Significant dif...
<p>Overall, greater numbers of host genes were upregulated and symbiont genes were downregulated by ...
Outline of the process for integrating and visualizing analysis of gene signature and ontology enric...
Table 2 (Supplemental): Complete data for all 100 recurrent expression programs (EPs) discovered by ...
Table S1: Post-trimming and mapping results to reference genome for all groups, Table S2: Differenti...
List of Up-regulated Differential Expressed Genes (DEGs) and List of Down-regulated Differential...
List of 1655 genes with a negative jGRP statistic meaning a down-regulation in LUAD tissues relative...
Table S1. Pathway Enrichment Analysis of Upregulated Genes. Table S2. Pathway Enrichment Analysis of...
Genes to gene ontology (GO) annotation of all significant genes (FDR < 5%) with FC > 1.5 from the DG...
Supplementary figures and tables. Figure S1: Comparison of thresholds to retrieve the number of comm...
PARADIGM analysis in The Cancer Genome Atlas (TCGA). Table S1. Pathways detected by gene set enrichm...
Supplementary Tables. This file contains 5 supplementary tables for this paper. Table S1. List of 4T...
Relates to Fig. 8b. Integrated gene signature and ontology enrichments for FGL2 focus gene analysis...
Outline of meta-profile generation using COO classification. Upper panel: the data sets used. Please...
Table S1 contains Bowtie2 mapping statistics for the experimental samples. Table S2 contains the dif...
Supplemental Table Legends: Table S1. Antibody manufacturers and clones Table S2. Significant dif...
<p>Overall, greater numbers of host genes were upregulated and symbiont genes were downregulated by ...
Outline of the process for integrating and visualizing analysis of gene signature and ontology enric...