Add to ORKGThe problem of recognizing motifs from biological data has been well-studied and numerous algorithms, both exact and approximate, have been proposed to address the underlying issue. We strongly believe that open availability and ease of accessibility of quality implementations for such algorithms are critical to the research community, in order to directly reproduce and utilize the results from other studies, so as not to reinvent the wheel. Moreover, it is also important for the implementation to be as generic as possible so that any researcher can to extend it with minimal effort to test a newly implemented algorithmic extension or heuristic. With this motivation, we choose to focus an existing algorithm, PatternBranching and, to a lesser...
In the post-genomic era, the ability to predict the behavior, the function, or the structure of biol...
Motif finding in biosequences is a very important and well-studied problem. However, the best algori...
AbstractAnalysis of DNA Sequence motifs is becoming increasingly important in the study of gene regu...
The problem of recognizing motifs from biological data has been well-studied and numerous algorithms...
Motivation: Motif detection for DNA sequences has many important applications in biological studies,...
This thesis studies the following problems: 1. Planted Motif Search. Discovering patterns in biologi...
OBJECTIVE: The human genome project has resulted in the generation of voluminous biological data. No...
<p>A. Each graph shows the motif detection accuracy (y-axis) as a function of the number of sequence...
Computational methods for de novo identification of gene regulation elements, such as transcription ...
I hereby declare that I am the sole author of this thesis. This is a true copy of the thesis, includ...
A major task in computational biology is the discovery of short recurring string patterns known as m...
Biological motifs are defined as overly recurring sub-patterns in biological systems. Sequence motif...
MOTIVATION: Motifs play a crucial role in computational biology, as they provide valuable informatio...
Abstract. Many algorithms for motif finding that are commonly used in bioinformatics start by sampli...
A major task in computational biology is the discovery of short recurring string patterns known as m...
In the post-genomic era, the ability to predict the behavior, the function, or the structure of biol...
Motif finding in biosequences is a very important and well-studied problem. However, the best algori...
AbstractAnalysis of DNA Sequence motifs is becoming increasingly important in the study of gene regu...
The problem of recognizing motifs from biological data has been well-studied and numerous algorithms...
Motivation: Motif detection for DNA sequences has many important applications in biological studies,...
This thesis studies the following problems: 1. Planted Motif Search. Discovering patterns in biologi...
OBJECTIVE: The human genome project has resulted in the generation of voluminous biological data. No...
<p>A. Each graph shows the motif detection accuracy (y-axis) as a function of the number of sequence...
Computational methods for de novo identification of gene regulation elements, such as transcription ...
I hereby declare that I am the sole author of this thesis. This is a true copy of the thesis, includ...
A major task in computational biology is the discovery of short recurring string patterns known as m...
Biological motifs are defined as overly recurring sub-patterns in biological systems. Sequence motif...
MOTIVATION: Motifs play a crucial role in computational biology, as they provide valuable informatio...
Abstract. Many algorithms for motif finding that are commonly used in bioinformatics start by sampli...
A major task in computational biology is the discovery of short recurring string patterns known as m...
In the post-genomic era, the ability to predict the behavior, the function, or the structure of biol...
Motif finding in biosequences is a very important and well-studied problem. However, the best algori...
AbstractAnalysis of DNA Sequence motifs is becoming increasingly important in the study of gene regu...