Disease Named Entity Recognition Using Conditional Random Fields

Abstract Named Entity Recognition is a crucial component in bio-medical text mining.In this paper a method for disease Named Entity Recognition is proposed which utilizes sentence and token level features based on Conditional Random Field's using NCBI disease corpus. The feature set used for the experiment includes orthographic,contextual,affixes,ngrams,part of speech tags and word normalization.Using these features,our approach has achieved a maximum F-score of 94% for the training set by applying 10 fold cross validation for semantic labeling of the NCBI disease corpus. For testing and development,F-score of 88% and 85% were reported