New pathways to obesity prevention and metabolic health : the relationship between diet and the gut microbiome : a thesis presented in partial fulfilment of the requirements for the degree of Doctor of Philosophy in Nutritional Science at Massey University, Tāmaki Makaurau, Aotearoa New Zealand

Background Diet is one of the key drivers of the global obesity epidemic. Based on the results of rodent experiments, the gut microbiota may play an important role in this multifaceted disease. Additionally, the microbiota is known to be influenced by the habitual diets consumed by humans. Aims and objectives The aim of this PhD research was to characterise the habitual dietary intake of two New Zealand populations (Pacific and New Zealand European (NZE) women) with different metabolic disease risk and body fat profiles (lean and obese). The first objective of the research was to explore the relationship between habitual macronutrient intake in relation to body fat content and metabolic health markers. The second objective was to characterise a posteriori dietary patterns (derived from multiple days of dietary assessment) and to explore the association with body fat content and metabolic health markers. The third objective was to explore the characteristics of microbiota composition in relation to habitual diet (dietary patterns, foods, and nutrients), body fat content and metabolic health markers. Methods Between July 2016 and September 2017, Pacific (n=126) and NZE (n=161) women, aged 18-45 years, living in Auckland, New Zealand, were recruited to a cross-sectional study, based on their body mass index (lean and obese) and stratified as having low (