We study the physics of Kaluza-Klein (KK) top quarks in the framework of a non-minimal Universal Extra Dimension (nmUED) with an orbifolded ( S 1 /Z 2 ) flat extra spatial dimension in the presence of brane-localized terms (BLTs). In general, BLTs affect the masses and the couplings of the KK excitations in a non-trivial way including those for the KK top quarks. On top of that, BLTs also influence the mixing of the top quark chiral states at each KK level and trigger mixings among excitations from different levels with identical KK parity (even or odd). The latter phenomenon of mixing of KK levels is not present in the popular UED scenario known as the minimal UED (mUED) at the tree level. Of particular interest are the mixings among the K...