We sketch the statistical physics framework of the replica exchange technique when applied to molecular dynamics simulations. In particular, we draw attention to generalized move sets that allow a variety of optimizations as well as new applications of the method
ABSTRACT: Many problems studied via molecular dynamics require accurate estimates of various thermod...
We have devised a systematic approach to converge a replica exchange molecular dynamics simulation b...
A replica exchange method is presented which requires fewer replicas and is designed to be used for ...
We sketch the statistical physics framework of the replica exchange technique when applied to molecu...
We present an approach to mimic replica exchange molecular dynamics simulations (REMD) on a microsec...
We address the question of constructing a protocol for replica-exchange molecular dynamics (REMD) si...
We discuss the use of velocity rescaling for generating rejection-free exchange moves in replica exc...
<p>We study the comparison of computational simulations of biomolecules to experimental data. We stu...
We developed a replica exchange method that is effectively parallelizable even if the computational ...
AbstractToday's standard molecular dynamics simulations of moderately sized biomolecular systems at ...
We study the dynamics of parallel tempering simulations, also known as the replica exchange techniqu...
A new application of the replica exchange technique is demonstrated for use in reactive Monte Carlo ...
We present microcanonical replica exchange molecular dynamics simulations as an alternative to canon...
We present microcanonical replica exchange molecular dynamics simulations as an alternative to canon...
A simple and general implementation of Hamiltonian replica exchange for the popular molecular-dynami...
ABSTRACT: Many problems studied via molecular dynamics require accurate estimates of various thermod...
We have devised a systematic approach to converge a replica exchange molecular dynamics simulation b...
A replica exchange method is presented which requires fewer replicas and is designed to be used for ...
We sketch the statistical physics framework of the replica exchange technique when applied to molecu...
We present an approach to mimic replica exchange molecular dynamics simulations (REMD) on a microsec...
We address the question of constructing a protocol for replica-exchange molecular dynamics (REMD) si...
We discuss the use of velocity rescaling for generating rejection-free exchange moves in replica exc...
<p>We study the comparison of computational simulations of biomolecules to experimental data. We stu...
We developed a replica exchange method that is effectively parallelizable even if the computational ...
AbstractToday's standard molecular dynamics simulations of moderately sized biomolecular systems at ...
We study the dynamics of parallel tempering simulations, also known as the replica exchange techniqu...
A new application of the replica exchange technique is demonstrated for use in reactive Monte Carlo ...
We present microcanonical replica exchange molecular dynamics simulations as an alternative to canon...
We present microcanonical replica exchange molecular dynamics simulations as an alternative to canon...
A simple and general implementation of Hamiltonian replica exchange for the popular molecular-dynami...
ABSTRACT: Many problems studied via molecular dynamics require accurate estimates of various thermod...
We have devised a systematic approach to converge a replica exchange molecular dynamics simulation b...
A replica exchange method is presented which requires fewer replicas and is designed to be used for ...