We explore a Markov model used in the analysis of gene expression, involving the bursty production of pre-mRNA, its conversion to mature mRNA, and its consequent degradation. We demonstrate that the integration used to compute the solution of the stochastic system can be approximated by the evaluation of special functions. Furthermore, the form of the special function solution generalizes to a broader class of burst distributions. In light of the broader goal of biophysical parameter inference from transcriptomics data, we apply the method to simulated data, demonstrating effective control of precision and runtime. Finally, we propose and validate a non-Bayesian approach for parameter estimation based on the characteristic function of the t...
AbstractFluorescent and luminescent proteins are often used as reporters of transcriptional activity...
Open access article. Creative Commons Attribution 3.0 Unported License (CC BY 3.0) appliesA previou...
We present a theoretical framework to analyze the dynamics of gene expression with stochastic bursts...
Transcription, the production of RNA from a gene, is an inherently stochastic process, as recent ex...
Recent advances in single-molecule fluorescent imaging have enabled quantitative measurements of tra...
Splicing cascades that alter gene products post-transcriptionally also affect expression dynamics. W...
This thesis is motivated by two associated obstacles we face for the solution and analysis of master...
We investigate the model of gene expression in the form of Iterated Function System (IFS), where th...
Motivation Transcription in single cells is an inherently stochastic process as mRNA levels vary ...
Signal-processing molecules inside cells are often present at low copy number, which necessitates pr...
Gene transcription is a stochastic process manifested by fluctuations in mRNA copy numbers in indivi...
International audienceThe recent development of single-cell transcriptomics has enabled gene express...
A previously studied model of prokaryotic transcription [Roussel and Zhu, Bull. Math. Biol. 68 (2006...
The spatio-temporal organization of one RNA polymerase (RNAP) along a DNA strand is explored by stud...
Recent advances in single-molecule fluorescent imaging have enabled quantitative measurements of tra...
AbstractFluorescent and luminescent proteins are often used as reporters of transcriptional activity...
Open access article. Creative Commons Attribution 3.0 Unported License (CC BY 3.0) appliesA previou...
We present a theoretical framework to analyze the dynamics of gene expression with stochastic bursts...
Transcription, the production of RNA from a gene, is an inherently stochastic process, as recent ex...
Recent advances in single-molecule fluorescent imaging have enabled quantitative measurements of tra...
Splicing cascades that alter gene products post-transcriptionally also affect expression dynamics. W...
This thesis is motivated by two associated obstacles we face for the solution and analysis of master...
We investigate the model of gene expression in the form of Iterated Function System (IFS), where th...
Motivation Transcription in single cells is an inherently stochastic process as mRNA levels vary ...
Signal-processing molecules inside cells are often present at low copy number, which necessitates pr...
Gene transcription is a stochastic process manifested by fluctuations in mRNA copy numbers in indivi...
International audienceThe recent development of single-cell transcriptomics has enabled gene express...
A previously studied model of prokaryotic transcription [Roussel and Zhu, Bull. Math. Biol. 68 (2006...
The spatio-temporal organization of one RNA polymerase (RNAP) along a DNA strand is explored by stud...
Recent advances in single-molecule fluorescent imaging have enabled quantitative measurements of tra...
AbstractFluorescent and luminescent proteins are often used as reporters of transcriptional activity...
Open access article. Creative Commons Attribution 3.0 Unported License (CC BY 3.0) appliesA previou...
We present a theoretical framework to analyze the dynamics of gene expression with stochastic bursts...