This paper presents a set of solutions based on the synergy between GIS and a numerical model to help in diagnosis and decision making for water quality related matters. After an overview of the model features, it describes the computer interface (ModelView) implemented as an extension of the Arc View (ESRI) GIS System to provide operational data communication between the model and the GIS in vector or raster form. The paper particularly focuses on changes in the quality of coastal waters from river discharges. It looks at the spatio-temporal representation of this behaviour and the spatial analysis of sensitive areas that can be impacted. Examples are given of a French coastal area subject to strong human pressure, i.e. marine cultures and...