This diploma thesis is focused on problematics of the industrial networks and offered security by the industrial protocols. The goal of this thesis is to create specific methods for detection of security incidents. This thesis is mainly focused on protocols Modbus/TCP and DNP3. In the theoretical part, the industrial protocols are described, there are defined vectors of attacks and is described security of each protocol. The practical part is focused on the description and simulation of security incidents. Based on the data gathered from the simulations, there are identified threats by the introduced detection methods. These methods are using for detecting the security incident an abnormality in the network traffic by created formulas or ma...