A method based on molecular dynamics simulations which employ two distinct levels of theory is proposed and tested for the prediction of Gibbs free energies of solvation for non-ionic solutes in water. The method consists of two additive contributions: (i) an evaluation of the free energy of solvation predicted by a computationally efficient molecular mechanics (MM) method; and (ii) an evaluation of the free energy difference between the potential energy surface of the MM method and that of a more computationally intensive first-principles quantum-mechanical (QM) method. The latter is computed by a thermodynamic integration method based on a series of shorter molecular dynamics simulations that employ weighted averages of the QM and MM forc...
We propose an efficient and accurate non-iterative method, dubbed uESE, for calculating solvation fr...
The solvent environment of molecules plays a very important role in their structure and function. In...
The ability of the GROMOS96 force field to reproduce partition constants between water and two less ...
Water is ubiquitous in the biosphere, and the difficulty of rigorously treating the effects of aqueo...
The partitioning of solute molecules between immiscible solvents with significantly different polari...
Maintaining a proper balance between specific intermolecular interactions and non-specific solvent i...
Maintaining a proper balance between specific intermolecular interactions and non-specific solvent i...
Maintaining a proper balance between specific intermolecular interactions and non-specific solvent i...
The aqueous solvation free energies of ionized molecules were computed using a coupled quantum mecha...
Solvation free energies can now be calculated precisely from molecular simulations, providing a valu...
For exploration of chemical and biological systems, the combined quantum mechanics and molecular mec...
ABSTRACT: Accurate prediction of hydration free energies is a key objective of any free energy metho...
One of the central aspects of biomolecular recognition is the hydrophobic effect, which is experimen...
factor in its total thermochemistry, often contrib-uting to free energy differences by an amount com...
The aim of this thesis is to develop improved methods for calculating the free energy, entropy and e...
We propose an efficient and accurate non-iterative method, dubbed uESE, for calculating solvation fr...
The solvent environment of molecules plays a very important role in their structure and function. In...
The ability of the GROMOS96 force field to reproduce partition constants between water and two less ...
Water is ubiquitous in the biosphere, and the difficulty of rigorously treating the effects of aqueo...
The partitioning of solute molecules between immiscible solvents with significantly different polari...
Maintaining a proper balance between specific intermolecular interactions and non-specific solvent i...
Maintaining a proper balance between specific intermolecular interactions and non-specific solvent i...
Maintaining a proper balance between specific intermolecular interactions and non-specific solvent i...
The aqueous solvation free energies of ionized molecules were computed using a coupled quantum mecha...
Solvation free energies can now be calculated precisely from molecular simulations, providing a valu...
For exploration of chemical and biological systems, the combined quantum mechanics and molecular mec...
ABSTRACT: Accurate prediction of hydration free energies is a key objective of any free energy metho...
One of the central aspects of biomolecular recognition is the hydrophobic effect, which is experimen...
factor in its total thermochemistry, often contrib-uting to free energy differences by an amount com...
The aim of this thesis is to develop improved methods for calculating the free energy, entropy and e...
We propose an efficient and accurate non-iterative method, dubbed uESE, for calculating solvation fr...
The solvent environment of molecules plays a very important role in their structure and function. In...
The ability of the GROMOS96 force field to reproduce partition constants between water and two less ...