Ph.D. University of Hawaii at Manoa 2012.Includes bibliographical references.Mycosporine-like amino acids (MAAs) are UVR-absorbing compounds ubiquitous in the aquatic environment. Metazoans appear to obtain them from their diet or from symbiotic microorganisms. The study of MAAs has been complicated by the lack of commercially available standards. Use of tandem mass spectrometry renders this problem tractable. My dissertation exploited the availability of previously published MAA fragmentation patterns to identify MAAs in the mucus of the corallivorous territorial butterflyfish, Chaetodon multicinctus. I next adapted both a powerful HPLC separation procedure and a tandem mass spectrometry technique to not only identify, but also quantify, M...