IADIS MULTI CONFERENCE ON COMPUTER SCIENCE AND INFORMATION SYSTEMS 2008 Amsterdam, The Netherlands JULY 22 - 24, 2008This paper proposes a software framework to model hybrid systems based on an extension of the Petri Net paradigm. Biology inspires changes proposed to the original paradigm. The main difference between this approach and others that can be found in literature is that token attributes may have their own dynamics, just like if they were living cells inside a more complex system. Object Oriented Programming is, at first, applied at this point so that these attributes are packaged in the token, so that most of the token complexity is hidden from the Petri net point of view. This grey box approach adds other important feat...
The whole-cell behavior arises from the interplay among signaling, metabolic, and regulatory process...
In its basic version, Petri Nets are defined as fixed graphs, where thebehaviour of the system is mo...
It was suggested some years ago that Petri nets might be well suited to modeling metabolic networks,...
Abstract. Coloured Petri nets are imperative for studying bigger bio-logical models, particularly, t...
The paper presents a model which provides a simple graphical representation of hybrid systems and ta...
International audienceThis article presents a new formalism based on Petri nets to model aging hybri...
Systems biology plays a central role for biological network analysis in the post-genomic era. Cytosc...
International audienceMany systems are naturally hybrid, i.e., their modeling needs at least one con...
The behavior and phenotypic changes of cells are governed by a cellular circuitry that represents a ...
Biological systems are often very complex so that an appropriate formalism is needed for modeling th...
Petri nets do not designate a single modeling formalism. In fact, newcomers to the field confess som...
The behavior of a hybrid system is a mixture of continuous behavior and discrete event behavior. The...
Abstract. “How might Petri nets enhance my Systems Biology toolkit?” – this is one of the questions ...
Metabolic P systems are a special class of P systems developed to model dynamics of biological pheno...
Petri nets are graphic-based modeling tools for systems where activity and information flows have an...
The whole-cell behavior arises from the interplay among signaling, metabolic, and regulatory process...
In its basic version, Petri Nets are defined as fixed graphs, where thebehaviour of the system is mo...
It was suggested some years ago that Petri nets might be well suited to modeling metabolic networks,...
Abstract. Coloured Petri nets are imperative for studying bigger bio-logical models, particularly, t...
The paper presents a model which provides a simple graphical representation of hybrid systems and ta...
International audienceThis article presents a new formalism based on Petri nets to model aging hybri...
Systems biology plays a central role for biological network analysis in the post-genomic era. Cytosc...
International audienceMany systems are naturally hybrid, i.e., their modeling needs at least one con...
The behavior and phenotypic changes of cells are governed by a cellular circuitry that represents a ...
Biological systems are often very complex so that an appropriate formalism is needed for modeling th...
Petri nets do not designate a single modeling formalism. In fact, newcomers to the field confess som...
The behavior of a hybrid system is a mixture of continuous behavior and discrete event behavior. The...
Abstract. “How might Petri nets enhance my Systems Biology toolkit?” – this is one of the questions ...
Metabolic P systems are a special class of P systems developed to model dynamics of biological pheno...
Petri nets are graphic-based modeling tools for systems where activity and information flows have an...
The whole-cell behavior arises from the interplay among signaling, metabolic, and regulatory process...
In its basic version, Petri Nets are defined as fixed graphs, where thebehaviour of the system is mo...
It was suggested some years ago that Petri nets might be well suited to modeling metabolic networks,...