Add to ORKGSummary: We present a new, extended version of the Protein Topology Graph Library (PTGL) web server. The PTGL describes the protein topology on the super-secondary structure level. It allows to compute and visualize protein ligand graphs and search for protein structural motifs. The new server features additional information on ligand binding to secondary structure elements (SSEs), increased usability, and an application programming interface (API) to retrieve data, allowing for an automated analysis of protein topology. Availability: The PTGL server is freely available on the web at http://ptgl.uni-frankfurt.de. The website is implemented in PHP, JavaScript, PostgreSQL and Apache. It is supported by all major browsers. The VPLG software th...
Wu, Cathy H.iPTMnet is a new bioinformatics resource for post-translational modifications (PTMs). It...
Motivation: In recent years, the Protein Data Bank (PDB) has experienced rapid growth. To maximize t...
Proteins are fundamental building blocks of all living organisms. They perform their function by bin...
peer reviewedSummary: We present a new, extended version of the Protein Topology Graph Library (PTGL...
<p>The Protein Topology Graph Library (PTGL) is a database of protein topologies that provides a web...
peer reviewedProtein Topology Graph Library (PTGL) is a database application for the representation ...
With growing amount of experimental data, the number of known protein structures also increases cont...
peer reviewedWith growing amount of experimental data, the number of known protein structures also i...
<p>Ligand information is of great interest to understand protein function. Protein structure topolog...
Motivation: Ligand information is of great interest to understand protein function. Protein structur...
Abstract Background In protein design, correct use of topology is among the initial and most critica...
Abstract: Protein structures can be represented as graphs/networks by defining the amino-acids as no...
With growing amount of experimental data, the number of known protein structures also increases cont...
This work deals with proteins, especially with their structure and kinds of tertiary, or 3D, structu...
In order to find rules for the secondary structure prediction of proteins which describe the (sequen...
Wu, Cathy H.iPTMnet is a new bioinformatics resource for post-translational modifications (PTMs). It...
Motivation: In recent years, the Protein Data Bank (PDB) has experienced rapid growth. To maximize t...
Proteins are fundamental building blocks of all living organisms. They perform their function by bin...
peer reviewedSummary: We present a new, extended version of the Protein Topology Graph Library (PTGL...
<p>The Protein Topology Graph Library (PTGL) is a database of protein topologies that provides a web...
peer reviewedProtein Topology Graph Library (PTGL) is a database application for the representation ...
With growing amount of experimental data, the number of known protein structures also increases cont...
peer reviewedWith growing amount of experimental data, the number of known protein structures also i...
<p>Ligand information is of great interest to understand protein function. Protein structure topolog...
Motivation: Ligand information is of great interest to understand protein function. Protein structur...
Abstract Background In protein design, correct use of topology is among the initial and most critica...
Abstract: Protein structures can be represented as graphs/networks by defining the amino-acids as no...
With growing amount of experimental data, the number of known protein structures also increases cont...
This work deals with proteins, especially with their structure and kinds of tertiary, or 3D, structu...
In order to find rules for the secondary structure prediction of proteins which describe the (sequen...
Wu, Cathy H.iPTMnet is a new bioinformatics resource for post-translational modifications (PTMs). It...
Motivation: In recent years, the Protein Data Bank (PDB) has experienced rapid growth. To maximize t...
Proteins are fundamental building blocks of all living organisms. They perform their function by bin...