A phylogenetic analysis of Apostasioideae (Orchidaceae) based on ITS, trn L-F and mat K sequences

The orchid subfamily Apostasioideae consists of two genera, Apostasia and Neuwiedia . To study the position of Apostasioideae within Orchidaceae and their intra- and intergeneric relationships, a molecular phylogenetic analysis has been conducted on the nuclear ITS region and the two plastid DNA regions trn L-F intron and mat K. The two genera traditionally ascribed to Apostasioideae are each monophyletic. In Apostasia , A. nuda , with two stamens and no staminode, is sister to a clade comprising three species characterised by two stamens and one staminode. Within Neuwiedia , maximum parsimony analyses place N. zollingeri as sister to the clade formed by N. borneensis and N. veratrifolia . A family-wide phylogenetic analysis of mat K sequences representing all proposed subfamilies of Orchidaceae produced five moderately to well-supported clades. One of these clades, Apostasioideae, is sister to the clade formed by Vanilloideae, Cypripedioideae, Orchidoideae and Epidendroideae. High transition-transversion ratio and the absence of stop codons in the individual sequences suggest that mat K is at the transition from a possibly functional gene to a pseudogene in Apostasioideae, contrary to what is found in some other groups of Orchidaceae.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/41641/1/606_2004_Article_133.pd