A replica exchange method is presented which requires fewer replicas and is designed to be used for large systems. In this method, dynamically scaled replicas are placed between conventional replicas at broadly spaced temperatures. The potential of the scaled replicas is linearly scaled by a dynamicalvariable which varies between 0 and 1. When the variable is near either end point the replica can undergo exchanges with one of its neighboring replicas. Two different versions of the method are presented for a model system of a small peptide in water. The scaled replica can replace manyreplicas and the method can be up to ten times more efficient than conventional replica exchange
AbstractTwo new methods of replica-exchange method (REM) are tested for a two-dimensional Ising spin...
We have applied replica exchange with solute tempering (REST) molecular dynamics to study a short fr...
We study generalizations of parallel tempering, also known as replica exchange method, that aim at m...
A replica exchange method is presented which requires fewer replicas and is designed to be used for ...
Replica exchange is a powerful simulation method in which simulations are run at a series of tempera...
We developed a replica exchange method that is effectively parallelizable even if the computational ...
A new application of the replica exchange technique is demonstrated for use in reactive Monte Carlo ...
We have devised a systematic approach to converge a replica exchange molecular dynamics simulation b...
We discuss the use of velocity rescaling for generating rejection-free exchange moves in replica exc...
This is a problem of sampling. The number of classical states of an N-body system grows with O( 3 ^ ...
ABSTRACT: Replica exchange (REX) is a powerful computa-tional tool for overcoming the quasi-ergodic ...
Parallel tempering (or the replica exchange method (REM)) is a powerful method for speeding up the s...
We study the dynamics of parallel tempering simulations, also known as the replica exchange techniqu...
We propose a scheme for replica exchange molecular dynamics of proteins in explicit solvent that min...
ABSTRACT: The computational study of conformational transitions in RNA and proteins with atomistic m...
AbstractTwo new methods of replica-exchange method (REM) are tested for a two-dimensional Ising spin...
We have applied replica exchange with solute tempering (REST) molecular dynamics to study a short fr...
We study generalizations of parallel tempering, also known as replica exchange method, that aim at m...
A replica exchange method is presented which requires fewer replicas and is designed to be used for ...
Replica exchange is a powerful simulation method in which simulations are run at a series of tempera...
We developed a replica exchange method that is effectively parallelizable even if the computational ...
A new application of the replica exchange technique is demonstrated for use in reactive Monte Carlo ...
We have devised a systematic approach to converge a replica exchange molecular dynamics simulation b...
We discuss the use of velocity rescaling for generating rejection-free exchange moves in replica exc...
This is a problem of sampling. The number of classical states of an N-body system grows with O( 3 ^ ...
ABSTRACT: Replica exchange (REX) is a powerful computa-tional tool for overcoming the quasi-ergodic ...
Parallel tempering (or the replica exchange method (REM)) is a powerful method for speeding up the s...
We study the dynamics of parallel tempering simulations, also known as the replica exchange techniqu...
We propose a scheme for replica exchange molecular dynamics of proteins in explicit solvent that min...
ABSTRACT: The computational study of conformational transitions in RNA and proteins with atomistic m...
AbstractTwo new methods of replica-exchange method (REM) are tested for a two-dimensional Ising spin...
We have applied replica exchange with solute tempering (REST) molecular dynamics to study a short fr...
We study generalizations of parallel tempering, also known as replica exchange method, that aim at m...