The parallel tempering, multicanonical ensemble, and multiple histogram methods are combined into a powerful technique allowing enhanced sampling of complex energy surfaces. This method is shown to improve significantly the ergodic behavior in simulations of cluster melting. Application to the finite-size effects in folding minimal off-lattice β-sheet model proteins shows that the collapse and folding transitions both involve some latent heat. © 2000 The American Physical Society
We perform a generalized-ensemble simulation of a small peptide taking the interactions among all at...
Competing phases or interactions in complex many-particle systems can result in free energy barriers...
We review uses of Tsallis statistical mechanics in the protein folding problem. Monte Carlo simulate...
Nested sampling is a Bayesian sampling technique developed to explore probability distributions loca...
The ultimate goal of the present work is to predict protein tertiary structures solely from the amin...
AbstractNested sampling is a Bayesian sampling technique developed to explore probability distributi...
The effectiveness of a new algorithm, parallel tempering, is studied for numerical simulations of bi...
Calculation of the free energy of protein folding and delineation of its pre-organization are of for...
We study the thermodynamic behavior of a simple off-lattice model for protein folding. The model is ...
A modified version of stochastic tunneling, a recently introduced global optimization technique, is ...
Replica exchange simulations have become the method of choice in computational protein science, but ...
ABSTRACT The folding ability of a heteropoly-mer model for proteins subject to Monte Carlo dynamics ...
The free energy landscapes of a small peptide were calculated as a function of a suitable reaction c...
©2001 American Institute of PhysicsThe electronic version of this article is the complete one and ca...
We discuss how the free energies of wild-type (normal) and mutant proteins can vary below the permis...
We perform a generalized-ensemble simulation of a small peptide taking the interactions among all at...
Competing phases or interactions in complex many-particle systems can result in free energy barriers...
We review uses of Tsallis statistical mechanics in the protein folding problem. Monte Carlo simulate...
Nested sampling is a Bayesian sampling technique developed to explore probability distributions loca...
The ultimate goal of the present work is to predict protein tertiary structures solely from the amin...
AbstractNested sampling is a Bayesian sampling technique developed to explore probability distributi...
The effectiveness of a new algorithm, parallel tempering, is studied for numerical simulations of bi...
Calculation of the free energy of protein folding and delineation of its pre-organization are of for...
We study the thermodynamic behavior of a simple off-lattice model for protein folding. The model is ...
A modified version of stochastic tunneling, a recently introduced global optimization technique, is ...
Replica exchange simulations have become the method of choice in computational protein science, but ...
ABSTRACT The folding ability of a heteropoly-mer model for proteins subject to Monte Carlo dynamics ...
The free energy landscapes of a small peptide were calculated as a function of a suitable reaction c...
©2001 American Institute of PhysicsThe electronic version of this article is the complete one and ca...
We discuss how the free energies of wild-type (normal) and mutant proteins can vary below the permis...
We perform a generalized-ensemble simulation of a small peptide taking the interactions among all at...
Competing phases or interactions in complex many-particle systems can result in free energy barriers...
We review uses of Tsallis statistical mechanics in the protein folding problem. Monte Carlo simulate...