Monte Carlo (MC) molecular simulation has significant computational complexity, and parallel processing is considered effective for computation of problems with large complexity. In recent years, multicore or many-core processors have gained significant attention as they enable computation with a large degree of parallelism on desktop computers. However, in conventional parallel processing, processes must be synchronized frequently; thus, parallel computing is not necessarily efficient. In this study, we evaluate the effect of applying MultiStart-based speculative parallel computation to MC simulations. Using probability theory, we performed theoretical verification to determine if speculative computation is more effective than conventional...
In molecular simulations performed by Markov Chain Monte Carlo (typically employing the Metropolis c...
With strict detailed balance, parallel Monte Carlo simulation through domain decomposition cannot be...
Accelerating Markov chain Monte Carlo via parallel predictive prefetching We present a general frame...
Monte Carlo (MC) molecular simulation has significant computational complexity, and parallel process...
Task-based programming models have demonstrated their efficiency in the development of scientific ap...
Stochastic simulation of reaction kinetics has emerged as animportant computational tool in molecula...
The reproducibility of numerical experiments on high performance computing systems is sometimes over...
Simulated annealing is known to be an efficient method for combinatorial optimization problems. Its ...
Monte carlo simulation is one of the techniques used to generate pseudorandomnumbers which can compr...
Experimental and theoretical studies have shown the importance of stochastic processes in genetic re...
AbstractIn simulations running in parallel, the processors would have to synchronize with other proc...
Accelerating Markov chain Monte Carlo via parallel predictive prefetching We present a general frame...
Abstract. We argue that Monte Carlo algorithms are ideally suited to parallel computing, and that “p...
Abstract. This paper considers parallel execution of the standard simulated an-nealing algorithm usi...
The Gillespie’s Stochastic Simulation Algorithm (SSA) is a compact, computer-oriented Monte Carlo si...
In molecular simulations performed by Markov Chain Monte Carlo (typically employing the Metropolis c...
With strict detailed balance, parallel Monte Carlo simulation through domain decomposition cannot be...
Accelerating Markov chain Monte Carlo via parallel predictive prefetching We present a general frame...
Monte Carlo (MC) molecular simulation has significant computational complexity, and parallel process...
Task-based programming models have demonstrated their efficiency in the development of scientific ap...
Stochastic simulation of reaction kinetics has emerged as animportant computational tool in molecula...
The reproducibility of numerical experiments on high performance computing systems is sometimes over...
Simulated annealing is known to be an efficient method for combinatorial optimization problems. Its ...
Monte carlo simulation is one of the techniques used to generate pseudorandomnumbers which can compr...
Experimental and theoretical studies have shown the importance of stochastic processes in genetic re...
AbstractIn simulations running in parallel, the processors would have to synchronize with other proc...
Accelerating Markov chain Monte Carlo via parallel predictive prefetching We present a general frame...
Abstract. We argue that Monte Carlo algorithms are ideally suited to parallel computing, and that “p...
Abstract. This paper considers parallel execution of the standard simulated an-nealing algorithm usi...
The Gillespie’s Stochastic Simulation Algorithm (SSA) is a compact, computer-oriented Monte Carlo si...
In molecular simulations performed by Markov Chain Monte Carlo (typically employing the Metropolis c...
With strict detailed balance, parallel Monte Carlo simulation through domain decomposition cannot be...
Accelerating Markov chain Monte Carlo via parallel predictive prefetching We present a general frame...