In industry, many problems are considered as the decentralized resource-constrained multi-project scheduling problem (DRCMPSP). Existing approaches encounter difficulties in dealing with large DRCMPSP cases while respecting the information privacy requirements of the project agents. In this paper, we tackle DRCMPSP by formulating it as a multi-unit combinatorial auction (Wellman et al. in Games Econ Behav 35(1):271–303, 2001), which does not require sensitive private project information. To handle the hardness of bidder valuation, we introduce the capacity query which uses different item capacity profiles to efficiently elicit valuation information from bidders. Based on the capacity query, we adopt two existing strategies (Gonen and Lehman...