We consider the statistical mechanics of a full set of two-dimensional protein-like heteropolymers, whose thermodynamics is characterized by the coil-to-globular ($T_\theta$) and the folding (Tf) transition temperatures. For our model, the typical time scale for reaching the unique native conformation is shown to scale as $\tau_{\rm f}\sim \exp[\sigma/\sigma_0]$. We argue that Tf scales linearly with the inverse of entropy of low-energy non-native states, whereas $T_\theta$ is almost independent of it. As $\sigma\rightarrow 0$, non-productive intermediates decrease, and the initial rapid collapse of the protein leads to structures resembling the native state. Based solely on thermodynamic information, σ can be used to predict sequences...
Protein folding is modeled as diffusion on a free-energy landscape, allowing use of the diffusion eq...
10 pages, 7 figures.-- PMID: 16834320 [PubMed].-- PMCID: PMC2546509.-- Author manuscript available i...
AbstractThe rapid folding of certain proteins can be described theoretically using an energy landsca...
BackgroundThe problem of how a protein chain can find its most stable structure without exhaustive s...
BackgroundRecent experimental and theoretical studies have revealed that protein folding kinetics ca...
The multipathway mechanism discovered using minimal protein models in conjunction with scaling argum...
AbstractUnderstanding how proteins fold is one of the central problems in biochemistry. A new genera...
AbstractExperimentally measured rates of spontaneous folding of single-domain globular proteins rang...
Abstract: We describe the master equation method for computing the kinetics of protein folding. We i...
In this thesis we have used concepts from the physics of disordered materials to study protein fold...
Proteins fold on a mu s-ms time scale. However, the number of possible conformations of the polypept...
BackgroundRecent data have suggested two principles that are central to the work we describe here. F...
One of the most important questions in molecular biology is what determines folding pathways: native...
Proteins do not fold by randomly searching a large number of nearly degenerate configurations; inst...
Background: Functionally useful proteins are sequences of amino acids that fold rapidly under approp...
Protein folding is modeled as diffusion on a free-energy landscape, allowing use of the diffusion eq...
10 pages, 7 figures.-- PMID: 16834320 [PubMed].-- PMCID: PMC2546509.-- Author manuscript available i...
AbstractThe rapid folding of certain proteins can be described theoretically using an energy landsca...
BackgroundThe problem of how a protein chain can find its most stable structure without exhaustive s...
BackgroundRecent experimental and theoretical studies have revealed that protein folding kinetics ca...
The multipathway mechanism discovered using minimal protein models in conjunction with scaling argum...
AbstractUnderstanding how proteins fold is one of the central problems in biochemistry. A new genera...
AbstractExperimentally measured rates of spontaneous folding of single-domain globular proteins rang...
Abstract: We describe the master equation method for computing the kinetics of protein folding. We i...
In this thesis we have used concepts from the physics of disordered materials to study protein fold...
Proteins fold on a mu s-ms time scale. However, the number of possible conformations of the polypept...
BackgroundRecent data have suggested two principles that are central to the work we describe here. F...
One of the most important questions in molecular biology is what determines folding pathways: native...
Proteins do not fold by randomly searching a large number of nearly degenerate configurations; inst...
Background: Functionally useful proteins are sequences of amino acids that fold rapidly under approp...
Protein folding is modeled as diffusion on a free-energy landscape, allowing use of the diffusion eq...
10 pages, 7 figures.-- PMID: 16834320 [PubMed].-- PMCID: PMC2546509.-- Author manuscript available i...
AbstractThe rapid folding of certain proteins can be described theoretically using an energy landsca...