Add to ORKGA very simple new program is presented (G-SQUARES). It is useful in order to visualize the composition and basic structural features of whole genomes and selected chromosome regions. The frequency of all dimer and tetramer sequences is reported. Overall structural features are calculated, such as the tendency for alternation. A direct visual comparison among different sequences is easily available. Furthermore, the features which are visualized indicate further studies which should be carried out. Examples are presented on Alu sequences, CpG islands, whole eukaryotic and bacterial genomes.Peer Reviewe
Genomes can be subject to Structural Variations (SVs): rearrangements of more than 50kb of a sequenc...
<p>Comparison of the genes in multiple genomes can be represented visually by using a 3D program. Ea...
Motivation: We describe a novel approach to explore DNA nucleotide sequence data, aiming to produce ...
Data visualization methods are necessary during the exploration and analysis activities of an increa...
In this article we describe and demonstrate the versatility of a computer program, GENOME MAPPING, t...
Algorithms for scaling and visualization of nucleotide sequences developed in this study allow ident...
The ever increasing rate at which whole genome sequences are becoming accessible to the scientific c...
The Advanced Relation Model for Genome Sequence Visualization (ARM 4 GSV) is proposed in this paper....
This paper analyzes the DNA code of several species in the perspective of information content. For t...
The new tools used to explore the human genome produce an enormous amount of data. This data has to ...
AbstractPrior to genome sequencing, information on base composition (GC level) and its variation in ...
Visual inspection can help reveal patterns that would be computationally rather difficult to reveal....
Human chromosome analysis is a basic science with medical implication. Karyotyping is a method to st...
Bachelor thesis deals with searching CpG islands in DNA. The theoretical part describes the structur...
Data visualization methods are necessary during the exploration and analysis activities of an increa...
Genomes can be subject to Structural Variations (SVs): rearrangements of more than 50kb of a sequenc...
<p>Comparison of the genes in multiple genomes can be represented visually by using a 3D program. Ea...
Motivation: We describe a novel approach to explore DNA nucleotide sequence data, aiming to produce ...
Data visualization methods are necessary during the exploration and analysis activities of an increa...
In this article we describe and demonstrate the versatility of a computer program, GENOME MAPPING, t...
Algorithms for scaling and visualization of nucleotide sequences developed in this study allow ident...
The ever increasing rate at which whole genome sequences are becoming accessible to the scientific c...
The Advanced Relation Model for Genome Sequence Visualization (ARM 4 GSV) is proposed in this paper....
This paper analyzes the DNA code of several species in the perspective of information content. For t...
The new tools used to explore the human genome produce an enormous amount of data. This data has to ...
AbstractPrior to genome sequencing, information on base composition (GC level) and its variation in ...
Visual inspection can help reveal patterns that would be computationally rather difficult to reveal....
Human chromosome analysis is a basic science with medical implication. Karyotyping is a method to st...
Bachelor thesis deals with searching CpG islands in DNA. The theoretical part describes the structur...
Data visualization methods are necessary during the exploration and analysis activities of an increa...
Genomes can be subject to Structural Variations (SVs): rearrangements of more than 50kb of a sequenc...
<p>Comparison of the genes in multiple genomes can be represented visually by using a 3D program. Ea...
Motivation: We describe a novel approach to explore DNA nucleotide sequence data, aiming to produce ...