In the quest towards coarse-grained potentials and new water models, we present an extension of the force matching technique to parameterize an all-atom force field for rigid water. The methodology presented here allows to improve the matching procedure by first optimizing the weighting exponents present in the objective function. A new gauge for unambiguously evaluating the quality of the fit has been introduced; it is based on the root mean square difference of the distributions of target properties between reference data and fitted potentials. Four rigid water models have been parameterized; the matching procedure has been used to assess the role of the ghost atom in TIP4P-like models and of electrostatic damping. In the former case, bur...
Parameterization of a molecular dynamics force field is essential in realistically modeling the phys...
The structural properties of three- and four-site water models are improved by extending the ForceBa...
In molecular mechanics simulations of biological systems, the solvation water is typically represent...
In the quest towards coarse-grained potentials and new water models, we present an extension of the ...
In this work, ab initio parametrization of water force field is used to get insights into the functi...
The development of accurate molecular mechanics force fields is a significant challenge that must be...
The development of accurate molecular mechanics force fields is a significant challenge that must be...
We present a method for the creation of classical force fields for water under dissociative thermody...
Given the piecewise approach to modeling intermolecular interactions for force fields, they can be d...
The structural properties of three- and four-site water models are improved by extending the ForceBa...
Classical molecular dynamics (MD) simulations based on atomistic models are increasingly used to stu...
The enormous number of atoms in biological and macromolecular systems can prohibit the direct applic...
Atomistic models provide a detailed representation of molecular systems, but are sometimes inadequat...
Protein modeling with molecular mechanics force fields plays an important role in computational biol...
Molecular simulations of water using classical, molecular mechanic potential energy functions have e...
Parameterization of a molecular dynamics force field is essential in realistically modeling the phys...
The structural properties of three- and four-site water models are improved by extending the ForceBa...
In molecular mechanics simulations of biological systems, the solvation water is typically represent...
In the quest towards coarse-grained potentials and new water models, we present an extension of the ...
In this work, ab initio parametrization of water force field is used to get insights into the functi...
The development of accurate molecular mechanics force fields is a significant challenge that must be...
The development of accurate molecular mechanics force fields is a significant challenge that must be...
We present a method for the creation of classical force fields for water under dissociative thermody...
Given the piecewise approach to modeling intermolecular interactions for force fields, they can be d...
The structural properties of three- and four-site water models are improved by extending the ForceBa...
Classical molecular dynamics (MD) simulations based on atomistic models are increasingly used to stu...
The enormous number of atoms in biological and macromolecular systems can prohibit the direct applic...
Atomistic models provide a detailed representation of molecular systems, but are sometimes inadequat...
Protein modeling with molecular mechanics force fields plays an important role in computational biol...
Molecular simulations of water using classical, molecular mechanic potential energy functions have e...
Parameterization of a molecular dynamics force field is essential in realistically modeling the phys...
The structural properties of three- and four-site water models are improved by extending the ForceBa...
In molecular mechanics simulations of biological systems, the solvation water is typically represent...