The architecture of present-day protein interaction networks depends on how protein associations evolved. Here, we explore how and why evolution-related mutations influence protein structure to promote protein associations, and thereby network development. We specifically address two questions: (i) How can protein folds remain conserved while proteins accommodate new binding partnerships as genes duplicate? (ii) What is the structural/molecular basis for hub proteins being the most likely to acquire new connections? The answers stem from the examination of the structure wrapping, or protection from water attack. Wrapping is shown to be a crucial consideration in the exploration and evolution of proteomic interactivity.Fil: Fernandez, Ariel....
In this thesis we propose some new approaches to the study of complex networks, and apply them to mu...
We attempt to understand the evolutionary origin of protein folds by simulating their divergent evol...
Fold switching may play a role in the evolution of new protein folds and functions. He et al., in th...
The topology of the proteome map revealed by recent large-scale hybridization methods has shown that...
AbstractThe rate of evolution-related mutation varies widely among proteins while the unity of the o...
Proteins are a major interface between the genotype and phenotype of living things. Understanding th...
Interactions between proteins are essential for intracellular communication. They form complex netwo...
AbstractHub proteins are proteins that maintain promiscuous molecular recognition. Because they are ...
Individual proteins, and small collections of proteins, have been extensively studied for at least t...
<div><p>Whole genome protein-protein association networks are not random and their topological prope...
Whole genome protein-protein association networks are not random and their topological properties st...
Whole genome protein-protein association networks are not random and their topological properties st...
The proteomes that make up the collection of proteins in contemporary organisms evolved through reco...
The next step in the understanding of the genome organization, after the determination of complete s...
Biological systems are complex entities comprising of parts that interact with each other within and...
In this thesis we propose some new approaches to the study of complex networks, and apply them to mu...
We attempt to understand the evolutionary origin of protein folds by simulating their divergent evol...
Fold switching may play a role in the evolution of new protein folds and functions. He et al., in th...
The topology of the proteome map revealed by recent large-scale hybridization methods has shown that...
AbstractThe rate of evolution-related mutation varies widely among proteins while the unity of the o...
Proteins are a major interface between the genotype and phenotype of living things. Understanding th...
Interactions between proteins are essential for intracellular communication. They form complex netwo...
AbstractHub proteins are proteins that maintain promiscuous molecular recognition. Because they are ...
Individual proteins, and small collections of proteins, have been extensively studied for at least t...
<div><p>Whole genome protein-protein association networks are not random and their topological prope...
Whole genome protein-protein association networks are not random and their topological properties st...
Whole genome protein-protein association networks are not random and their topological properties st...
The proteomes that make up the collection of proteins in contemporary organisms evolved through reco...
The next step in the understanding of the genome organization, after the determination of complete s...
Biological systems are complex entities comprising of parts that interact with each other within and...
In this thesis we propose some new approaches to the study of complex networks, and apply them to mu...
We attempt to understand the evolutionary origin of protein folds by simulating their divergent evol...
Fold switching may play a role in the evolution of new protein folds and functions. He et al., in th...