Lycophyte plastid genomics: extreme variation in GC, gene and intron content and multiple inversions between a direct and inverted orientation of the rRNA repeat

A rticle Reconstruction of the Ancestral Plastid Genome in Geraniaceae Reveals a Correlation between Genome Rearrangements, Repeats, and Nucleotide Substitution Rates

Mao-lun Weng
John C. Blazier
Madhumita Govindu
Robert K. Jansen

September 2016

Geraniaceae plastid genomes are highly rearranged, and each of the four genera already sequenced in ...

DNA Sequence Analysis of an Inversion Hot Spot in Lobeliaceae Plastomes

Eric B. Knox

October 2022

The evolution of plastid genomes (plastomes) in land plants is typically conservative, with extensiv...

The Unique Evolutionary Trajectory and Dynamic Conformations of DR and IR/DR-Coexisting Plastomes of the Early Vascular Plant Selaginellaceae (Lycophyte)

Zhang, Hong-Rui
Xiang, Qiao-Ping
Zhang, Xian-Chun

January 2019

Both direct repeats (DR) and inverted repeats (IR) are documented in the published plastomes of Sela...

Lycophyte plastid genomics: extreme variation in GC, gene and intron content and multiple inversions between a direct and inverted orientation of the rRNA repeat

Mower, Jeffrey P.
Ma, Peng-Fei
Grewe, Felix
Taylor, Alex
Michael, Todd P.
VanBuren, Robert
Qiu, Yin-Long

January 2018

Lycophytes are a key group for understanding vascular plant evolution. Lycophyte plastomes are highl...

Data from: Recombination-dependent replication and gene conversion homogenize repeat sequences and diversify plastid genome structure

Ruhlman, Tracey A.
Zhang, Jin
Blazier, John C.
Sabir, Jamal S. M.
Jansen, Robert K.

PREMISE OF THE STUDY: There is a misinterpretation in the literature regarding the variable orientat...

Dynamic evolution of the chloroplast genome in the green algal classes pedinophyceae and trebouxiophyceae

Lemieux, Claude
Otis, Christian
Turmel, Monique

July 2015

Previous studies of trebouxiophycean chloroplast genomes revealed little information regarding the e...

Genes Translocated into the Plastid Inverted Repeat Show Decelerated Substitution Rates and Elevated GC Content.

Li, Fay-Wei
Kuo, Li-Yaung
Pryer, Kathleen M
Rothfels, Carl J

August 2016

Plant chloroplast genomes (plastomes) are characterized by an inverted repeat (IR) region and two la...

Directed Repeats Co-occur with Few Short-Dispersed Repeats in Plastid Genome of a Spikemoss, Selaginella vardei (Selaginellaceae, Lycopodiopsida)

Zhang, Hong-Rui
Zhang, Xian-Chun
Xiang, Qiao-Ping

January 2019

BackgroundIt is hypothesized that the highly conserved inverted repeats (IR) structure of land plant...

Investigating Plastid Genome Evolution in Heterotrophic Plants and the Use of Structural Changes to the Plastid Genome as Phylogenetic Markers

Braukmann, Thomas Werner Anthony

June 2015

Photosynthesis is the hallmark of plant evolution; the vast majority of plants are autotrophic and r...

Rates and patterns of plastid genome evolution in the flowering plant families Geraniaceae and Poaceae

Guisinger, Mary Margaret

August 2009

textThe plastid genomes of land plants are generally highly conserved in gene content and order, gen...

Phylogenomics and comparative plastome analysis of mycoheterotrophic plants

Lam, Vivienne Ka Yee

January 2016

Plastid genomes (plastomes) of fully mycoheterotrophic plants (which obtain nutrition from fungi and...

Accelerated substitution rates, plastid genome evolution and cytonuclear coevolution in Geraniaceae

Weng, Mao-Lun

May 2017

Plastids are cytoplasmic organelles that are descendants of free-living prokaryotes. Since endosymbi...

Evolutionary dynamics of the plastid inverted repeat: the effects of expansion, contraction, and loss on substitution rates

Zhu, Andan
Guo, Wenhu
Fan, Weishu
Mower, Jeffrey P

January 2016

Rates of nucleotide substitution were previously shown to be several times slower in the plastid inv...

Data from: Correlation between sequence divergence and polymorphism reveals similar evolutionary mechanisms acting across multiple timescales in a rapidly evolving plastid genome

Barnard-Kubow, Karen B.
Sloan, Daniel B.
Galloway, Laura F.

Background: Although the plastid genome is highly conserved across most angiosperms, multiple lineag...

A recurring syndrome of accelerated plastid genome evolution in the angiosperm tribe Sileneae (Caryophyllaceae)

Sloan, Daniel B.
Triant, Deborah A.
Forrester, Nicole J.
Bergner, Laura M.
Wu, Martin
Taylor, Douglas R.

May 2014

In flowering plants, plastid genomes are generally conserved, exhibiting slower rates of sequence e...

A rticle Reconstruction of the Ancestral Plastid Genome in Geraniaceae Reveals a Correlation between Genome Rearrangements, Repeats, and Nucleotide Substitution Rates

Mao-lun Weng
John C. Blazier
Madhumita Govindu
Robert K. Jansen

September 2016

Geraniaceae plastid genomes are highly rearranged, and each of the four genera already sequenced in ...

DNA Sequence Analysis of an Inversion Hot Spot in Lobeliaceae Plastomes

Eric B. Knox

October 2022

The evolution of plastid genomes (plastomes) in land plants is typically conservative, with extensiv...

The Unique Evolutionary Trajectory and Dynamic Conformations of DR and IR/DR-Coexisting Plastomes of the Early Vascular Plant Selaginellaceae (Lycophyte)

Zhang, Hong-Rui
Xiang, Qiao-Ping
Zhang, Xian-Chun

January 2019

Both direct repeats (DR) and inverted repeats (IR) are documented in the published plastomes of Sela...

Lycophyte plastid genomics: extreme variation in GC, gene and intron content and multiple inversions between a direct and inverted orientation of the rRNA repeat

Mower, Jeffrey P.
Ma, Peng-Fei
Grewe, Felix
Taylor, Alex
Michael, Todd P.
VanBuren, Robert
Qiu, Yin-Long

January 2018

Lycophytes are a key group for understanding vascular plant evolution. Lycophyte plastomes are highl...

Data from: Recombination-dependent replication and gene conversion homogenize repeat sequences and diversify plastid genome structure

Ruhlman, Tracey A.
Zhang, Jin
Blazier, John C.
Sabir, Jamal S. M.
Jansen, Robert K.

PREMISE OF THE STUDY: There is a misinterpretation in the literature regarding the variable orientat...

Dynamic evolution of the chloroplast genome in the green algal classes pedinophyceae and trebouxiophyceae

Lemieux, Claude
Otis, Christian
Turmel, Monique

July 2015

Previous studies of trebouxiophycean chloroplast genomes revealed little information regarding the e...

Genes Translocated into the Plastid Inverted Repeat Show Decelerated Substitution Rates and Elevated GC Content.

Li, Fay-Wei
Kuo, Li-Yaung
Pryer, Kathleen M
Rothfels, Carl J

August 2016

Plant chloroplast genomes (plastomes) are characterized by an inverted repeat (IR) region and two la...

Directed Repeats Co-occur with Few Short-Dispersed Repeats in Plastid Genome of a Spikemoss, Selaginella vardei (Selaginellaceae, Lycopodiopsida)

Zhang, Hong-Rui
Zhang, Xian-Chun
Xiang, Qiao-Ping

January 2019

BackgroundIt is hypothesized that the highly conserved inverted repeats (IR) structure of land plant...

Investigating Plastid Genome Evolution in Heterotrophic Plants and the Use of Structural Changes to the Plastid Genome as Phylogenetic Markers

Braukmann, Thomas Werner Anthony

June 2015

Photosynthesis is the hallmark of plant evolution; the vast majority of plants are autotrophic and r...

Rates and patterns of plastid genome evolution in the flowering plant families Geraniaceae and Poaceae

Guisinger, Mary Margaret

August 2009

textThe plastid genomes of land plants are generally highly conserved in gene content and order, gen...

Phylogenomics and comparative plastome analysis of mycoheterotrophic plants

Lam, Vivienne Ka Yee

January 2016

Plastid genomes (plastomes) of fully mycoheterotrophic plants (which obtain nutrition from fungi and...

Accelerated substitution rates, plastid genome evolution and cytonuclear coevolution in Geraniaceae

Weng, Mao-Lun

May 2017

Plastids are cytoplasmic organelles that are descendants of free-living prokaryotes. Since endosymbi...

Evolutionary dynamics of the plastid inverted repeat: the effects of expansion, contraction, and loss on substitution rates

Zhu, Andan
Guo, Wenhu
Fan, Weishu
Mower, Jeffrey P

January 2016

Rates of nucleotide substitution were previously shown to be several times slower in the plastid inv...

Data from: Correlation between sequence divergence and polymorphism reveals similar evolutionary mechanisms acting across multiple timescales in a rapidly evolving plastid genome

Barnard-Kubow, Karen B.
Sloan, Daniel B.
Galloway, Laura F.

Background: Although the plastid genome is highly conserved across most angiosperms, multiple lineag...

A recurring syndrome of accelerated plastid genome evolution in the angiosperm tribe Sileneae (Caryophyllaceae)

Sloan, Daniel B.
Triant, Deborah A.
Forrester, Nicole J.
Bergner, Laura M.
Wu, Martin
Taylor, Douglas R.

May 2014

In flowering plants, plastid genomes are generally conserved, exhibiting slower rates of sequence e...

A rticle Reconstruction of the Ancestral Plastid Genome in Geraniaceae Reveals a Correlation between Genome Rearrangements, Repeats, and Nucleotide Substitution Rates

Mao-lun Weng
John C. Blazier
Madhumita Govindu
Robert K. Jansen

September 2016

Geraniaceae plastid genomes are highly rearranged, and each of the four genera already sequenced in ...

DNA Sequence Analysis of an Inversion Hot Spot in Lobeliaceae Plastomes

Eric B. Knox

October 2022

The evolution of plastid genomes (plastomes) in land plants is typically conservative, with extensiv...

The Unique Evolutionary Trajectory and Dynamic Conformations of DR and IR/DR-Coexisting Plastomes of the Early Vascular Plant Selaginellaceae (Lycophyte)

Zhang, Hong-Rui
Xiang, Qiao-Ping
Zhang, Xian-Chun

January 2019

Both direct repeats (DR) and inverted repeats (IR) are documented in the published plastomes of Sela...

Lycophyte plastid genomics: extreme variation in GC, gene and intron content and multiple inversions between a direct and inverted orientation of the rRNA repeat

Abstract

Extracted data

Lycophyte plastid genomics: extreme variation in GC, gene and intron content and multiple inversions between a direct and inverted orientation of the rRNA repeat

Abstract

Extracted data

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