This note outlines some of the key intellectual obstacles that stand in the way of creating a usable phylogenetic database. These challenges include the need to accommodate multiple taxonomic names and classifications, and the need for tools to query trees in biologically meaningful ways. Until these problems are addressed, and a taxonomically intelligent phylogenetic database created, much of our phylogenetic knowledge will languish in the pages of journals
The motivation for the development of phylogenetic nomenclature (originally called “phylogenetic tax...
Phylogenetic analyses are central to many research areas in biology and typically involve the identi...
textThe phylogeny problem is to reconstruct the phylogenetic tree in which the leaves are labeled b...
Abstract Background Bioinformatic tools are needed to store and access the rapidly growing phylogene...
Most biological data and knowledge are directly or indirectly linked to biological taxa via taxon na...
Background: TreeBASE, the only data repository for phylogenetic studies, is not being used effective...
The ever increasing number of computer programs developed for phylogenetic research does not necessa...
Though molecular phylogenetics has been very successful in reconstructing the evolutionary history ...
Published onlineJournal ArticleThe phylogenetic analysis of nucleotide sequences and increasingly th...
Background: A so called ``taxonomic impediment{''} has been recognized as a major obstacle to biodiv...
Rich collections of biodiversity data are now synthesized in publically available databases and phyl...
Under the Alfred P. Sloan Fellowship in Computational Biology, I have been afforded the opportunity ...
Paper available from http://www.biomedcentral.com/1471-2148/9/108International audienceBackground: M...
Taxonomic names are ambiguous as identifiers of biodiversity data, as they refer to a particular con...
Reconstructing the phylogenetic relationships that unite all line- ages (the tree of life) is a gran...
The motivation for the development of phylogenetic nomenclature (originally called “phylogenetic tax...
Phylogenetic analyses are central to many research areas in biology and typically involve the identi...
textThe phylogeny problem is to reconstruct the phylogenetic tree in which the leaves are labeled b...
Abstract Background Bioinformatic tools are needed to store and access the rapidly growing phylogene...
Most biological data and knowledge are directly or indirectly linked to biological taxa via taxon na...
Background: TreeBASE, the only data repository for phylogenetic studies, is not being used effective...
The ever increasing number of computer programs developed for phylogenetic research does not necessa...
Though molecular phylogenetics has been very successful in reconstructing the evolutionary history ...
Published onlineJournal ArticleThe phylogenetic analysis of nucleotide sequences and increasingly th...
Background: A so called ``taxonomic impediment{''} has been recognized as a major obstacle to biodiv...
Rich collections of biodiversity data are now synthesized in publically available databases and phyl...
Under the Alfred P. Sloan Fellowship in Computational Biology, I have been afforded the opportunity ...
Paper available from http://www.biomedcentral.com/1471-2148/9/108International audienceBackground: M...
Taxonomic names are ambiguous as identifiers of biodiversity data, as they refer to a particular con...
Reconstructing the phylogenetic relationships that unite all line- ages (the tree of life) is a gran...
The motivation for the development of phylogenetic nomenclature (originally called “phylogenetic tax...
Phylogenetic analyses are central to many research areas in biology and typically involve the identi...
textThe phylogeny problem is to reconstruct the phylogenetic tree in which the leaves are labeled b...